=>> Building biology/ncbi-blast+ build started at Sat May 3 03:44:28 BST 2025 port directory: /usr/ports/biology/ncbi-blast+ package name: ncbi-blast+-2.16.0_3 building for: FreeBSD pkg-builder.dan.net.uk 14.2-RELEASE FreeBSD 14.2-RELEASE amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 3578 Mar 6 18:47 /usr/ports/biology/ncbi-blast+/Makefile Ports top last git commit: 5529c5919b Ports top unclean checkout: yes Port dir last git commit: 8de761e7d4 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1402000 Job Id: 04 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1402000 UNAME_v=FreeBSD 14.2-RELEASE UNAME_r=14.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/04/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=14-amd64-default-dan SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/14-amd64-default-dan/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- AR="ar cr" --without-boost --libdir=/usr/local/lib/ncbi-tools++ --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=/usr/local/bin/gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/ncbi-blast+" EXAMPLESDIR="share/examples/ncbi-blast+" DATADIR="share/ncbi-blast+" WWWDIR="www/ncbi-blast+" ETCDIR="etc/ncbi-blast+" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-blast+ DOCSDIR=/usr/local/share/doc/ncbi-blast+ EXAMPLESDIR=/usr/local/share/examples/ncbi-blast+ WWWDIR=/usr/local/www/ncbi-blast+ ETCDIR=/usr/local/etc/ncbi-blast+ --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### CCACHE_CPP2=1 WITH_SSP_PORTS=yes WITH_SSP=yes #WITH_LTO=yes DISABLE_LICENSES=yes LICENSES_ACCEPTED=AGPLv3 APACHE10 APACHE11 APACHE20 ART10 ARTPERL10 ART20 BSD BSD2CLAUSE BSD3CLAUSE BSD4CLAUSE BSL CC0-1.0 CDDL ClArtistic EPL GFDL GMGPL GPLv1 GPLv2 GPLv3 GPLv3RLE ISCL LGPL20 LGPL21 LGPL3 LPPL10 LPPL11 LPPL12 LPPL13 LPPL13a LPPL13b LPPL13c MIT MPL OpenSSL OFL10 OFL11 OWL PostgreSQL PHP202 PHP30 PHP301 PSFL RUBY ZLIB ZPL21 SVM-Light EULA ALASIR Microsoft-exFAT SIMIAN UDEVGAME unknown MTA COMMERCIAL teamspeak NO_LICENSES_DIALOGS=yes #### #### NO_IGNORE=yes DEFAULT_VERSIONS+=ssl=openssl apache=2.4 imagemagick=7 java=21 linux=c7 mysql=8.0 php=8.3 samba=4.19 varnish=7 WITH_SETID_MODE=force PHP_ZTS=enabled OPTIONS_UNSET+=OPENJPEG OPTIONS_UNSET+=GSSAPI_BASE OPTIONS_SET+=ZTS OPTIONS_SET+=GSSAPI_NONE ALLOW_UNSUPPORTED_SYSTEM=yes WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-blast+-2.16.0_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.1.2.pkg [pkg-builder.dan.net.uk] Installing pkg-2.1.2... [pkg-builder.dan.net.uk] Extracting pkg-2.1.2: .......... done ===> ncbi-blast+-2.16.0_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.16.0_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-blast+-2.16.0_3 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-blast+-2.16.0_3 for building => SHA256 Checksum OK for ncbi-blast-2.16.0+-src.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-blast+-2.16.0_3 for building ===> Extracting for ncbi-blast+-2.16.0_3 => SHA256 Checksum OK for ncbi-blast-2.16.0+-src.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for ncbi-blast+-2.16.0_3 ===> Applying FreeBSD patches for ncbi-blast+-2.16.0_3 from /usr/ports/biology/ncbi-blast+/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-blast+-2.16.0_3 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg-builder.dan.net.uk] Installing gmake-4.4.1... [pkg-builder.dan.net.uk] `-- Installing gettext-runtime-0.23.1... [pkg-builder.dan.net.uk] | `-- Installing indexinfo-0.3.1_1... [pkg-builder.dan.net.uk] | `-- Extracting indexinfo-0.3.1_1: . done [pkg-builder.dan.net.uk] `-- Extracting gettext-runtime-0.23.1: .......... done [pkg-builder.dan.net.uk] Extracting gmake-4.4.1: .......... done ===> ncbi-blast+-2.16.0_3 depends on package: gmake>=4.4.1 - found ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on file: /usr/local/bin/python3.11 - not found ===> Installing existing package /packages/All/python311-3.11.12.pkg [pkg-builder.dan.net.uk] Installing python311-3.11.12... [pkg-builder.dan.net.uk] `-- Installing libffi-3.4.8... [pkg-builder.dan.net.uk] `-- Extracting libffi-3.4.8: .......... done [pkg-builder.dan.net.uk] `-- Installing mpdecimal-4.0.0... [pkg-builder.dan.net.uk] `-- Extracting mpdecimal-4.0.0: .......... done [pkg-builder.dan.net.uk] `-- Installing openssl-3.0.16,1... [pkg-builder.dan.net.uk] `-- Extracting openssl-3.0.16,1: .......... done [pkg-builder.dan.net.uk] `-- Installing readline-8.2.13_2... [pkg-builder.dan.net.uk] `-- Extracting readline-8.2.13_2: .......... done [pkg-builder.dan.net.uk] Extracting python311-3.11.12: .......... done ===== Message from python311-3.11.12: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> ncbi-blast+-2.16.0_3 depends on file: /usr/local/bin/python3.11 - found ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on package: perl5>=5.36<5.37 - not found ===> Installing existing package /packages/All/perl5-5.36.3_3.pkg [pkg-builder.dan.net.uk] Installing perl5-5.36.3_3... [pkg-builder.dan.net.uk] Extracting perl5-5.36.3_3: .......... done ===> ncbi-blast+-2.16.0_3 depends on package: perl5>=5.36<5.37 - found ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg-builder.dan.net.uk] Installing ccache-3.7.12_8... [pkg-builder.dan.net.uk] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> ncbi-blast+-2.16.0_3 depends on file: /usr/local/bin/ccache - found ===> Returning to build of ncbi-blast+-2.16.0_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-blast+-2.16.0_3 depends on shared library: libdw.so - not found ===> Installing existing package /packages/All/elfutils-0.187_2.pkg [pkg-builder.dan.net.uk] Installing elfutils-0.187_2... [pkg-builder.dan.net.uk] `-- Installing argp-standalone-1.5.0_1... [pkg-builder.dan.net.uk] `-- Extracting argp-standalone-1.5.0_1: ...... done [pkg-builder.dan.net.uk] `-- Installing curl-8.13.0_1... [pkg-builder.dan.net.uk] | `-- Installing brotli-1.1.0,1... [pkg-builder.dan.net.uk] | `-- Extracting brotli-1.1.0,1: .......... done [pkg-builder.dan.net.uk] | `-- Installing libidn2-2.3.8... [pkg-builder.dan.net.uk] | | `-- Installing libunistring-1.3... [pkg-builder.dan.net.uk] | | `-- Extracting libunistring-1.3: .......... done [pkg-builder.dan.net.uk] | `-- Extracting libidn2-2.3.8: .......... done [pkg-builder.dan.net.uk] | `-- Installing libnghttp2-1.65.0... [pkg-builder.dan.net.uk] | `-- Extracting libnghttp2-1.65.0: ....... done [pkg-builder.dan.net.uk] | `-- Installing libssh2-1.11.1,3... [pkg-builder.dan.net.uk] | `-- Extracting libssh2-1.11.1,3: .......... done [pkg-builder.dan.net.uk] | `-- Installing zstd-1.5.7... [pkg-builder.dan.net.uk] | | `-- Installing liblz4-1.10.0,1... [pkg-builder.dan.net.uk] | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg-builder.dan.net.uk] | `-- Extracting zstd-1.5.7: .......... done [pkg-builder.dan.net.uk] `-- Extracting curl-8.13.0_1: .......... done [pkg-builder.dan.net.uk] Extracting elfutils-0.187_2: .......... done ===> ncbi-blast+-2.16.0_3 depends on shared library: libdw.so - found (/usr/local/lib/libdw.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: libgcrypt.so - not found ===> Installing existing package /packages/All/libgcrypt-1.11.0.pkg [pkg-builder.dan.net.uk] Installing libgcrypt-1.11.0... [pkg-builder.dan.net.uk] `-- Installing libgpg-error-1.55... [pkg-builder.dan.net.uk] `-- Extracting libgpg-error-1.55: .......... done [pkg-builder.dan.net.uk] Extracting libgcrypt-1.11.0: .......... done ===> ncbi-blast+-2.16.0_3 depends on shared library: libgcrypt.so - found (/usr/local/lib/libgcrypt.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: libgmp.so - not found ===> Installing existing package /packages/All/gmp-6.3.0.pkg [pkg-builder.dan.net.uk] Installing gmp-6.3.0... [pkg-builder.dan.net.uk] Extracting gmp-6.3.0: .......... done ===> ncbi-blast+-2.16.0_3 depends on shared library: libgmp.so - found (/usr/local/lib/libgmp.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: libgnutls.so - not found ===> Installing existing package /packages/All/gnutls-3.8.9.pkg [pkg-builder.dan.net.uk] Installing gnutls-3.8.9... [pkg-builder.dan.net.uk] `-- Installing libtasn1-4.20.0_1... [pkg-builder.dan.net.uk] `-- Extracting libtasn1-4.20.0_1: .......... done [pkg-builder.dan.net.uk] `-- Installing nettle-3.10.1... [pkg-builder.dan.net.uk] `-- Extracting nettle-3.10.1: .......... done [pkg-builder.dan.net.uk] `-- Installing p11-kit-0.25.5... [pkg-builder.dan.net.uk] `-- Extracting p11-kit-0.25.5: .......... done [pkg-builder.dan.net.uk] `-- Installing unbound-1.23.0... [pkg-builder.dan.net.uk] | `-- Installing expat-2.7.1... [pkg-builder.dan.net.uk] | `-- Extracting expat-2.7.1: .......... done ===> Creating groups Using existing group 'unbound' ===> Creating users Using existing user 'unbound' [pkg-builder.dan.net.uk] `-- Extracting unbound-1.23.0: .......... done [pkg-builder.dan.net.uk] Extracting gnutls-3.8.9: .......... done ===> ncbi-blast+-2.16.0_3 depends on shared library: libgnutls.so - found (/usr/local/lib/libgnutls.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: libgpg-error.so - found (/usr/local/lib/libgpg-error.so) ===> ncbi-blast+-2.16.0_3 depends on shared library: libgrpc.so - not found ===> Installing existing package /packages/All/grpc-1.70.1_2,2.pkg [pkg-builder.dan.net.uk] Installing grpc-1.70.1_2,2... [pkg-builder.dan.net.uk] `-- Installing abseil-20250127.0... [pkg-builder.dan.net.uk] `-- Extracting abseil-20250127.0: .......... done [pkg-builder.dan.net.uk] `-- Installing benchmark-1.9.2,1... [pkg-builder.dan.net.uk] `-- Extracting benchmark-1.9.2,1: .......... done [pkg-builder.dan.net.uk] `-- Installing c-ares-1.34.5... [pkg-builder.dan.net.uk] `-- Extracting c-ares-1.34.5: .......... done [pkg-builder.dan.net.uk] `-- Installing opentelemetry-cpp-1.20.0... [pkg-builder.dan.net.uk] | `-- Installing googletest-1.16.0... [pkg-builder.dan.net.uk] | `-- Extracting googletest-1.16.0: .......... done [pkg-builder.dan.net.uk] `-- Extracting opentelemetry-cpp-1.20.0: .......... done [pkg-builder.dan.net.uk] `-- Installing protobuf-29.4,1... [pkg-builder.dan.net.uk] | `-- Installing jsoncpp-1.9.6_1... [pkg-builder.dan.net.uk] | `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg-builder.dan.net.uk] `-- Extracting protobuf-29.4,1: .......... done [pkg-builder.dan.net.uk] `-- Installing re2-20240702_1... [pkg-builder.dan.net.uk] `-- Extracting re2-20240702_1: ......... done [pkg-builder.dan.net.uk] Extracting grpc-1.70.1_2,2: .......... done ===> ncbi-blast+-2.16.0_3 depends on shared library: libgrpc.so - found (/usr/local/lib/libgrpc.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: libhogweed.so - found (/usr/local/lib/libhogweed.so) ===> ncbi-blast+-2.16.0_3 depends on shared library: libidn2.so - found (/usr/local/lib/libidn2.so) ===> ncbi-blast+-2.16.0_3 depends on shared library: liblmdb.so - not found ===> Installing existing package /packages/All/lmdb-0.9.33,1.pkg [pkg-builder.dan.net.uk] Installing lmdb-0.9.33,1... [pkg-builder.dan.net.uk] Extracting lmdb-0.9.33,1: .......... done ===> ncbi-blast+-2.16.0_3 depends on shared library: liblmdb.so - found (/usr/local/lib/liblmdb.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: liblzo2.so - not found ===> Installing existing package /packages/All/lzo2-2.10_1.pkg [pkg-builder.dan.net.uk] Installing lzo2-2.10_1... [pkg-builder.dan.net.uk] Extracting lzo2-2.10_1: .......... done ===> ncbi-blast+-2.16.0_3 depends on shared library: liblzo2.so - found (/usr/local/lib/liblzo2.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: libnettle.so - found (/usr/local/lib/libnettle.so) ===> ncbi-blast+-2.16.0_3 depends on shared library: libnghttp2.so - found (/usr/local/lib/libnghttp2.so) ===> ncbi-blast+-2.16.0_3 depends on shared library: libp11-kit.so - found (/usr/local/lib/libp11-kit.so) ===> ncbi-blast+-2.16.0_3 depends on shared library: libpcre.so - not found ===> Installing existing package /packages/All/pcre-8.45_4.pkg [pkg-builder.dan.net.uk] Installing pcre-8.45_4... [pkg-builder.dan.net.uk] Extracting pcre-8.45_4: .......... done ===== Message from pcre-8.45_4: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: EOLed by upstream, use devel/pcre2 instead. ===> ncbi-blast+-2.16.0_3 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: libsqlite3.so - not found ===> Installing existing package /packages/All/sqlite3-3.46.1_1,1.pkg [pkg-builder.dan.net.uk] Installing sqlite3-3.46.1_1,1... [pkg-builder.dan.net.uk] `-- Installing libedit-3.1.20250104,1... [pkg-builder.dan.net.uk] `-- Extracting libedit-3.1.20250104,1: .......... done [pkg-builder.dan.net.uk] Extracting sqlite3-3.46.1_1,1: ......... done ===> ncbi-blast+-2.16.0_3 depends on shared library: libsqlite3.so - found (/usr/local/lib/libsqlite3.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: libtasn1.so - found (/usr/local/lib/libtasn1.so) ===> ncbi-blast+-2.16.0_3 depends on shared library: libtspi.so - not found ===> Installing existing package /packages/All/trousers-0.3.14_5.pkg [pkg-builder.dan.net.uk] Installing trousers-0.3.14_5... [pkg-builder.dan.net.uk] `-- Installing tpm-emulator-0.7.4_3... ===> Creating groups Creating group '_tss' with gid '601' ===> Creating users Creating user '_tss' with uid '601' [pkg-builder.dan.net.uk] `-- Extracting tpm-emulator-0.7.4_3: ......... done ===> Creating groups Using existing group '_tss' ===> Creating users Using existing user '_tss' [pkg-builder.dan.net.uk] Extracting trousers-0.3.14_5: .......... done ===== Message from trousers-0.3.14_5: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===> ncbi-blast+-2.16.0_3 depends on shared library: libtspi.so - found (/usr/local/lib/libtspi.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: libuv.so - not found ===> Installing existing package /packages/All/libuv-1.51.0.pkg [pkg-builder.dan.net.uk] Installing libuv-1.51.0... [pkg-builder.dan.net.uk] Extracting libuv-1.51.0: .......... done ===> ncbi-blast+-2.16.0_3 depends on shared library: libuv.so - found (/usr/local/lib/libuv.so) ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on shared library: libzstd.so - found (/usr/local/lib/libzstd.so) =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for ncbi-blast+-2.16.0_3 /usr/bin/sed -i.bak -e 's|/net/|/nonexistent/net/|g' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/sra/readers/ncbi_traces_path.hpp /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/create_flat_makefile.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gc_cli/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/configuration.txt /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/unit_test/data/large_gi.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder.ini /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/cmake/CMake.NCBIptb.datatool.cmake /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/new_module.sh.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.meta_l /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/config.site.ncbi configure: loading site script /usr/ports/Templates/config.site configure: creating cache config.cache checking TeamCity build number... none checking VCS revision... unknown checking NCBI stable components' version... unknown checking build system type... amd64-portbld-freebsd14.2 checking host system type... amd64-portbld-freebsd14.2 checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for amd64-portbld-freebsd14.2-gcc... no checking for gcc... no checking for amd64-portbld-freebsd14.2-cc... no checking for cc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking how to run the C preprocessor... cc -E checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes adjusted C compiler: /usr/local/libexec/ccache/cc adjusted C++ compiler: /usr/local/libexec/ccache/c++ checking for grep that handles long lines and -e... 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/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/./Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc/common/ncbi_build_ver.h config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbi_revision.h config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc/ncbiconf_unix.h config.status: executing default commands /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib/ncbicfg.c is updated /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc/common/ncbi_build_ver.h is updated Build session ID: 046ab521-27c9-11f0-882a-005056b296de /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/helpers TMPL=run_with_lock -k flag-stamps gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/helpers' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/helpers TMPL=run_with_lock -k all gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/helpers' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/helpers/run_with_lock.c. cc -c -g -O2 -DNCBI_APP_BUILT_AS=run_with_lock -DNCBI_BUILD_SESSION_ID=046ab521-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o cc -Wl,-rpath,/usr/local/lib/ncbi-tools++ run_with_lock.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lm -pthread -o run_with_lock strip run_with_lock /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f run_with_lock /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/run_with_lock gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/helpers' Prebuilt project_tree_builder not found =============================================================================== NCBI C++ Toolkit documentation: Online: https://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O LIBRARIES: build as static by default FEATURES: Int8GI LLVMClang Clang MT LFS DLL unix WinMain BSD PSGLoader PACKAGES: enabled: Iconv LIBDW Z BZ2 LZO ZSTD PCRE MBEDTLS GMP GMP NETTLE NETTLE OPENSSL KRB5 CURL PYTHON PERL EXPAT SQLITE3 MAGIC GMOCK LMDB LIBUV LIBSSH2 NGHTTP2 PROTOBUF GRPC disabled: UUID FUSE LIBUNWIND BACKWARD_CPP LocalZ LocalBZ2 LocalPCRE GCRYPT GNUTLS Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON25 PYTHON26 PYTHON27 PYTHON3 Boost.Chrono Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.Serialization Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Thread C-Toolkit NCBICRYPT OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI FASTCGIPP LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3ASYNC VDB NGS OECHEM SGE DRMAA2 MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM GL2PS FreeType FTGL MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 LEVELDB LIBURING ROCKSDB LAPACK LocalLMDB CASSANDRA H2O INFLUXDB LIBXLSXWRITER MSGSL AWS_SDK CRC32C GOOGLE_CLOUD HIREDIS APACHE_ARROW LIBRDKAFKA CPPKAFKA THRIFT NLohmann_JSON YAML_CPP OPENTRACING JAEGER PROJECTS: enabled: cgi serial objects dbapi app algo disabled: bdb ctools gui gbench Tools / flags / paths: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.mk Configuration header: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc/ncbiconf_unix.h To build everything: cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build && /usr/local/bin/gmake all_r or simply run /usr/local/bin/gmake in the current directory ******* CONFIGURATION SUCCESSFUL ******* =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for ncbi-blast+-2.16.0_3 if test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build && /usr/local/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build && /usr/local/bin/gmake all_p; \ else \ cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build && /usr/local/bin/gmake all_r; \ fi gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build' Build session ID: 04b9c536-27c9-11f0-882a-005056b296de /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/ctools/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/ctools/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/ctools/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT ctools/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/ctools/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/gui/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/gui/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/gui/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT gui/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/gui/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/sample/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/sample/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/sample/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT sample/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sample/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/internal/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/internal/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/internal/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT internal/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/internal/Makefile /usr/local/bin/gmake -C corelib all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/jaeger/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/jaeger/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/jaeger/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT jaeger/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib/jaeger/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib TMPL=corelib export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib TMPL=test_mt export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib TMPL=corelib flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib TMPL=test_mt flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib TMPL=corelib all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_os_unix.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_os_unix.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_os_unix.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/blob_storage.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/blob_storage.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/blob_storage.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/blob_storage.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/blob_storage.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/blob_storage.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ddumpable.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ddumpable.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ddumpable.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ddumpable.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ddumpable.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ddumpable.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/env_reg.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/env_reg.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/env_reg.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/env_reg.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/env_reg.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/env_reg.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/metareg.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/metareg.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/metareg.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/metareg.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/metareg.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/metareg.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_config.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_config.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_config.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_param.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_param.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_param.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_process.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_process.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_process.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_safe_static.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_safe_static.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_safe_static.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_signal.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_signal.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_signal.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_signal.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_signal.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_signal.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_stack.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_stack.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_stack.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_system.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_system.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_system.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiapp.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiapp.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiapp.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiargs.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiargs.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiargs.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidbg.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidbg.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidbg.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag.cpp:956:20: warning: 'GetProperties' is deprecated [-Wdeprecated-declarations] 956 | value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag.cpp:464:5: note: 'GetProperties' has been explicitly marked deprecated here 464 | NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag.cpp:3755:26: warning: 'SetupDiag_AppSpecific' is deprecated [-Wdeprecated-declarations] 3755 | app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:393:5: note: 'SetupDiag_AppSpecific' has been explicitly marked deprecated here 393 | NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag_p.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag_p.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag_p.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag_p.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag_p.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag_p.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidll.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidll.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidll.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidll.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidll.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidll.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbienv.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbienv.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbienv.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiexec.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexec.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiexec.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexec.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiexec.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexec.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiexpt.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiexpt.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiexpt.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbifile.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbifile.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbifile.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbimempool.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimempool.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbimempool.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimempool.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbimempool.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimempool.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbimtx.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbimtx.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbimtx.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiobj.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiobj.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiobj.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbireg.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbireg.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbireg.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistr.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistr.cpp:4930:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 4930 | return ParseEscapes(s_Unquote(move(str), n_read)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistr.cpp:4998:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 4998 | return s_ParseJsonEncodeEscapes(s_Unquote(move(str), n_read)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistr.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistr.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistre.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistre.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistre.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbithr.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbithr.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbithr.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbitime.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbitime.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbitime.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/obj_store.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/obj_store.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/obj_store.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/obj_store.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/obj_store.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/obj_store.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/plugin_manager.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/plugin_manager.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/plugin_manager.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/plugin_manager_store.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager_store.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/plugin_manager_store.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager_store.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/plugin_manager_store.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager_store.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/stream_utils.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/stream_utils.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/stream_utils.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/syslog.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/syslog.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/syslog.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/syslog.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/syslog.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/syslog.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/version.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version_api.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/version.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version_api.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/version.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version_api.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_ctx.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/request_ctx.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_ctx.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/request_ctx.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_ctx.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/request_ctx.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_control.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_control.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_control.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/expr.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/expr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/expr.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/expr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/expr.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/expr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/resource_info.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_bswap.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/resource_info.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_bswap.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/resource_info.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_bswap.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/interprocess_lock.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/interprocess_lock.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/interprocess_lock.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_autoinit.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_autoinit.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_autoinit.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/perf_log.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/perf_log.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/perf_log.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/perf_log.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/perf_log.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/perf_log.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_toolkit.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_toolkit.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_toolkit.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbierror.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbierror.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbierror.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_url.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_url.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_url.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_cookies.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_cookies.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_cookies.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_message.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_message.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_message.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_message.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_message.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_message.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/ncbi_dbsvcmapper.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/ncbi_dbsvcmapper.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/ncbi_dbsvcmapper.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_pool_balancer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/ncbi_dbsvcmapper.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_pool_balancer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/ncbi_dbsvcmapper.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_pool_balancer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/ncbi_dbsvcmapper.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_os_unix.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/version.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/expr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/guard.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/guard.cpp -o guard.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_status.cpp -o request_status.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp -o ncbi_dbsvcmapper.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib TMPL=test_mt all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/test_mt.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/test_mt.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/test_mt.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/test_mt.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/test_mt.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/test_mt.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/test_mt.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -C test all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib/test' /usr/local/bin/gmake -C jaeger all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib/jaeger' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib' /usr/local/bin/gmake -C util all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/diff/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/diff/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT diff/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/diff/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/image/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/image/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/image/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT image/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/image/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/qparse/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/qparse/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT qparse/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/qparse/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/demo/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/demo/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/demo/Makefile gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util TMPL=util export-headers gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util TMPL=util flag-stamps gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util TMPL=util all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/random_gen.cpp:75: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/random_gen.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/random_gen.cpp:75: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/random_gen.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/random_gen.cpp:75: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/random_gen.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/utf8.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/utf8.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/utf8.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/utf8.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/utf8.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/utf8.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum_cityhash.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum/cityhash/city.cc:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum/cityhash/config.h:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum_cityhash.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum/cityhash/city.cc:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum/cityhash/config.h:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum_cityhash.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum/cityhash/city.cc:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum/cityhash/config.h:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum_farmhash.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum/farmhash/config.h:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum_farmhash.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum/farmhash/config.h:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum_farmhash.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum/farmhash/config.h:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/bytesrc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/bytesrc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/bytesrc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/strbuffer.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/strbuffer.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/strbuffer.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/itree.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/itree.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/itree.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/smalldns.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/smalldns.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/smalldns.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool_old.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_old.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool_old.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_old.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool_old.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_old.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ddump_viewer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ddump_viewer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ddump_viewer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/strsearch.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/strsearch.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/strsearch.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/strsearch.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/strsearch.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/strsearch.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/logrotate.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/logrotate.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/logrotate.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/logrotate.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/logrotate.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/logrotate.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/format_guess.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/format_guess.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/format_guess.cpp:2844:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] 2844 | return x_IsTruncatedJsonNumber(testString) | | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | || 2845 | x_IsTruncatedJsonKeyword(testString); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/format_guess.cpp:2844:12: note: cast one or both operands to int to silence this warning In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/format_guess.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/format_guess.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/format_guess.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/format_guess.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ascii85.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/ascii85.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ascii85.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/ascii85.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ascii85.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/ascii85.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/md5.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/md5.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/md5.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/md5.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/md5.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/md5.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/file_obsolete.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/file_obsolete.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/file_obsolete.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/file_obsolete.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/file_obsolete.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/file_obsolete.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/unicode.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/unicode.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/unicode.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/unicode.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/unicode.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/unicode.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/dictionary.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/dictionary.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/dictionary.cpp:133:12: warning: variable 'count' set but not used [-Wunused-but-set-variable] 133 | size_t count = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/dictionary.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/dictionary.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/dictionary.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/dictionary.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/dictionary_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_map.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/dictionary_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_map.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/dictionary_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_map.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_nonstop.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_nonstop.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_nonstop.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_nonstop.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_nonstop.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_nonstop.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sgml_entity.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sgml_entity.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sgml_entity.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sgml_entity.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sgml_entity.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sgml_entity.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/static_set.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/static_set.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/static_set.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/transmissionrw.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/transmissionrw.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/transmissionrw.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/mutex_pool.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/mutex_pool.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/mutex_pool.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/mutex_pool.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/mutex_pool.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/mutex_pool.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ncbi_cache.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/ncbi_cache.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ncbi_cache.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/ncbi_cache.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ncbi_cache.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/ncbi_cache.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/line_reader.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/line_reader.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/line_reader.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/line_reader.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/line_reader.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/line_reader.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/util_exception.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/util_exception.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/util_exception.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multi_writer.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multi_writer.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multi_writer.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/itransaction.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/itransaction.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/itransaction.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/itransaction.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/itransaction.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/itransaction.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_old.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_old.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_old.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool_ctrl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_ctrl.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_old.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool_ctrl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_ctrl.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_old.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool_ctrl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_ctrl.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/thread_pool_old.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/scheduler.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/scheduler.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/scheduler.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/distribution.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/distribution.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/rangelist.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/distribution.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/distribution.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/rangelist.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/distribution.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/distribution.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/rangelist.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/rangelist.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/rangelist.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/rangelist.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/rangelist.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/rangelist.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/rangelist.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/util_misc.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_misc.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/util_misc.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_misc.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/util_misc.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_misc.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/table_printer.cpp:34: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/table_printer.cpp:34: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/table_printer.cpp:34: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/retry_ctx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_cookies.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_url.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/retry_ctx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_cookies.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_url.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/retry_ctx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_cookies.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_url.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/stream_source.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/stream_source.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/stream_source.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/file_manifest.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/file_manifest.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/file_manifest.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/cache_async.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/cache_async.cpp:283:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 283 | return new SDeferredWriter(m_ThreadPool, m_Writer, move(meta)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/cache_async.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/cache_async.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/multipattern_search.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search_impl.hpp:107:105: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 107 | CRegXTerm(unique_ptr& x, unsigned int min, unsigned int max, bool lazy = false) : m_RegX(move(x)), m_Min(min), m_Max(max), m_Lazy(lazy) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search_impl.hpp:121:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 121 | CRegXConcat(vector >& v) : m_Vec(move(v)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search_impl.hpp:132:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 132 | CRegXSelect(vector >& v) : m_Vec(move(v)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search_impl.hpp:154:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 154 | CRegXAssert(EAssert a, unique_ptr& x) : m_Assert(a), m_RegX(move(x)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:318:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 318 | return move(V[0]); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:328:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 328 | V.push_back(move(x)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:338:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 338 | return move(V[0]); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:349:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 349 | V.push_back(move(x)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:359:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 359 | return move(V[0]); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:1183:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1183 | w.push_back(move(p)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:1188:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1188 | w[i]->Merge(move(w[j])); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:1192:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1192 | Merge(move(w[0])); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:1203:28: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1203 | m_States.push_back(move(state)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/multipattern_search.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/multipattern_search.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 16 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/crc32_sse.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/crc32_sse.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/crc32_sse.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/random_gen.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/utf8.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/itree.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/smalldns.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/strsearch.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/logrotate.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/format_guess.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ascii85.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/md5.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/unicode.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/dictionary.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/static_set.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/miscmath.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/line_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/util_exception.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/uttp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/itransaction.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/scheduler.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/distribution.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/rangelist.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/util_misc.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/table_printer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/stream_source.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/cache_async.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/crc32_sse.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall 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-std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C regexp all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/regexp' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/regexp TMPL=regexp mark-as-disabled gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/regexp' /usr/local/bin/gmake -C xregexp all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp TMPL=xregexp export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp TMPL=xregexp flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp TMPL=xregexp all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/regexp.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/regexp.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/regexp.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/arg_regexp.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/xregexp/arg_regexp.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/arg_regexp.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/xregexp/arg_regexp.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/arg_regexp.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/xregexp/arg_regexp.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/mask_regexp.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/xregexp/mask_regexp.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/mask_regexp.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/xregexp/mask_regexp.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/mask_regexp.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/xregexp/mask_regexp.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp:41: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp:41: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp:41: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/regexp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/xregexp' /usr/local/bin/gmake -C compress all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress' /usr/local/bin/gmake -C bzip2 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/bzip2 TMPL=bzip2 mark-as-disabled gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/local/bin/gmake -C zlib all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/zlib TMPL=zlib mark-as-disabled gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/local/bin/gmake -C api all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api TMPL=compress export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api TMPL=compress flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api TMPL=compress all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/compress.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/compress.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/compress.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/stream.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/stream.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/stream.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/streambuf.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/streambuf.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/compress.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/streambuf.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/streambuf.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/compress.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/streambuf.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/streambuf.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/compress.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/stream_util.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream_util.hpp:57: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/compress.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/stream_util.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream_util.hpp:57: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/compress.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/stream_util.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream_util.hpp:57: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/compress.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/bzip2.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/bzip2.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/compress.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/bzip2.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/bzip2.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/compress.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/bzip2.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/bzip2.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/stream.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/compress.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/lzo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 1 warning generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/zlib.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/zlib.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/zlib.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/zstd.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/zstd.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/zstd.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/reader_zlib.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/reader_zlib.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/reader_zlib.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/reader_zlib.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/reader_zlib.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/reader_zlib.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/tar.cpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/tar.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/tar.cpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/tar.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/tar.cpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/tar.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/archive_.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/archive_.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/compress/archive_.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_zip.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_zip.cpp:61: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/miniz/miniz.c:3098:9: warning: Using fopen, ftello, fseeko, stat() etc. path for file I/O - this path may not support large files. [-W#pragma-messages] 3098 | #pragma message("Using fopen, ftello, fseeko, stat() etc. path for file I/O - this path may not support large files.") | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_zip.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_zip.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/compress.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/zstd.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_zip.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/compress.cpp -o compress.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/stream.cpp -o stream.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 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-D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/zstd.cpp -o zstd.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/tar.cpp -o tar.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive.cpp -o archive.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/compress' /usr/local/bin/gmake -C diff all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/diff' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/diff' /usr/local/bin/gmake -C image all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/image' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/image' /usr/local/bin/gmake -C tables all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/tables/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/tables/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables/test/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/tables TMPL=tables export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/tables TMPL=tables flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/tables TMPL=tables all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/tables/raw_scoremat.c. /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C sequtil all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil TMPL=sequtil export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil TMPL=sequtil flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil TMPL=sequtil all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert_imp.hpp:289:30: warning: private field 'm_GapsOK' is not used [-Wunused-private-field] 289 | const bool m_GapsOK; | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_manip.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_manip.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_manip.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_tables.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_tables.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sequtil/sequtil.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_tables.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_tables.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sequtil/sequtil.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_tables.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_tables.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sequtil/sequtil.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_shared.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_shared.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_shared.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_shared.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -C bitset all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/bitset' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/bitset/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/bitset/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/bitset/demo/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/bitset/demo/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/bitset/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/bitset/test' /usr/local/bin/gmake -C demo all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/bitset' /usr/local/bin/gmake -C qparse all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/qparse' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/qparse' /usr/local/bin/gmake -C lmdb all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdb' NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdb' /usr/local/bin/gmake -C lmdbxx all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/lmdbxx/example.cpp:6: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_config.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_tree.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/lmdbxx/example.cpp:6: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_config.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_tree.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/lmdbxx/example.cpp:6: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_config.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_tree.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/lmdbxx/example.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/lmdbxx/example.cpp -o example.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O example.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lxncbi -llmdb -pthread -ldw -lm -pthread -o lmdbxx_sample strip lmdbxx_sample /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/local/bin/gmake -C test all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/test' /usr/local/bin/gmake -C demo all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/demo' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/demo' /usr/local/bin/gmake -C profile all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/profile TMPL=utrtprof export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/profile TMPL=utrtprof flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/profile TMPL=utrtprof all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/profile/rtprofile.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/profile/rtprofile.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/profile/rtprofile.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/profile/rtprofile.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libutrtprof.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.utrtprof.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util/profile' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C connect all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/test/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=connssl export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=connect export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xxconnect export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xconnect export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xxconnect2 export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xthrserv export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=connssl flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=connect flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xxconnect flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xconnect flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xxconnect2 flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xthrserv flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=connssl all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_gnutls.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/aria.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/asn1parse.c. 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Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/platform_util.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/poly1305.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_aead.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_cipher.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_client.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_driver_wrappers.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_ecp.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_hash.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_mac.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_rsa.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_se.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_slot_management.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_crypto_storage.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/psa_its_file.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/rsa_internal.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_msg.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c. /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_msg.c -o mbedtls/ssl_msg.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=connect all /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lbsm_ipc.c:498:13: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] 498 | if ((one = (s_Shmid[0] != -1)) | (two = (s_Shmid[1] != -1))) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | || /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lbsm_ipc.c:498:13: note: cast one or both operands to int to silence this warning 1 warning generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket.c:2318:16: warning: variable 'x_ready' set but not used [-Wunused-but-set-variable] 2318 | nfds_t x_ready = 0; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket.c:2758:34: warning: unknown warning group '-Wmaybe-uninitialized', ignored [-Wunknown-warning-option] 2758 | # pragma GCC diagnostic ignored "-Wmaybe-uninitialized"/* NCBI_FAKE_WARNING */ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket.c:2763:34: warning: unknown warning group '-Wmaybe-uninitialized', ignored [-Wunknown-warning-option] 2763 | # pragma GCC diagnostic warning "-Wmaybe-uninitialized"/* NCBI_FAKE_WARNING */ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket.c:2983:14: warning: variable 'error' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] 2983 | (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ | ^~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket.c:3020:13: note: uninitialized use occurs here 3020 | if (error == SOCK_EWOULDBLOCK || error == SOCK_EAGAIN) { | ^~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket.c:2983:14: note: remove the '&&' if its condition is always true 2983 | (x_read < 0 && ((error = SOCK_ERRNO) == SOCK_ENOTCONN || /*NCBI_FAKE_WARNING*/ | ^~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket.c:2974:18: note: initialize the variable 'error' to silence this warning 2974 | int error; | ^ | = 0 4 warnings generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lbsmd.c:696:52: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] 696 | || SERV_EqualInfo(skip, &svc->info))) { | ^~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lbsmd.c:699:46: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] 699 | } else if (SERV_EqualInfo(skip, &svc->info)) | ^~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lbsmd.c:850:32: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] 850 | cand[n].cand.info = &svc->info; | ^~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lbsmd.c:938:38: warning: taking address of packed member 'info' of class or structure 'SLBSM_Service' may result in an unaligned pointer value [-Waddress-of-packed-member] 938 | if ((info = SERV_CopyInfoEx(&svc->info, name)) != 0) { | ^~~~~~~~~ 4 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lbsm.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lbsm_ipc.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lbsmd.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/parson.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_localip.c. 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/usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xxconnect all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket_cxx.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_socket_unix.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_socket.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket_cxx.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_socket_unix.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_socket.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket_cxx.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_socket_unix.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_socket.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_core_cxx.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_core_cxx.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_core_cxx.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/email_diag_handler.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/email_diag_handler.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/email_diag_handler.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/email_diag_handler.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/email_diag_handler.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/email_diag_handler.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_stream.hpp:88: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_stream.hpp:88: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_stream.hpp:88: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_stream.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_stream.hpp:88: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_stream.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_stream.hpp:88: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_stream.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_stream.hpp:88: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_test.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_test.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_test.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namedpipe.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/error_codes.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namedpipe.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/error_codes.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namedpipe.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/error_codes.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_namedpipe.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_pipe.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexec.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_pipe.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexec.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_pipe.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexec.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_pipe_connector.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_pipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_pipe.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_pipe_connector.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_pipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_pipe.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_pipe_connector.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_pipe_connector.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_pipe.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_reader_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/reader_writer.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_reader_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/reader_writer.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_reader_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/reader_writer.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_userhost.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_socket.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_userhost.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_socket.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_userhost.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_socket.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_session.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_session.cpp:41: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_session.cpp:471:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 471 | m_Stream(move(stream)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_session.cpp:514:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 514 | m_StatusText = move(status_text); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_session.cpp:791:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 791 | m_Response->x_Update(move(headers), status_code, move(status_text)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_session.cpp:791:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 791 | m_Response->x_Update(move(headers), status_code, move(status_text)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_session.cpp:925:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 925 | m_Stream = move(stream); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_session.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_session.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 12 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_service_cxx.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_service_cxx.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_service_cxx.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_core_cxx.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_usage_report.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_usage_report.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_usage_report.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_usage_report.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc.cpp:32: In file included from /usr/include/c++/v1/array:138: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc.cpp:38: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc.cpp:130:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 130 | CServiceDiscovery::TServer server(move(address), 1.0); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc.cpp:131:64: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 131 | return make_shared(1, move(server)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc.cpp:32: In file included from /usr/include/c++/v1/array:138: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc.cpp:32: In file included from /usr/include/c++/v1/array:138: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 9 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket_cxx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc.cpp -o connect_misc.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xconnect all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xxconnect2 all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_uv_nghttp2.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc_impl.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_uv_nghttp2.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_uv_nghttp2.cpp:1024:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1024 | OnReset(move(error)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_uv_nghttp2.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc_impl.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_uv_nghttp2.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connect_misc_impl.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_uv_nghttp2.cpp:36: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:214:88: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 214 | static void s_OnAlloc(uv_handle_t* handle, size_t suggested_size, uv_buf_t* buf) { OnCallback(&SUv_Tcp::OnAlloc, handle, suggested_size, buf); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:215:85: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 215 | static void s_OnRead(uv_stream_t* stream, ssize_t nread, const uv_buf_t* buf) { OnCallback(&SUv_Tcp::OnRead, stream, nread, buf); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:216:58: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 216 | static void s_OnWrite(uv_write_t* req, int status) { OnCallback(&SUv_Tcp::OnWrite, req, status); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:217:62: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 217 | static void s_OnConnect(uv_connect_t* req, int status) { OnCallback(&SUv_Tcp::OnConnect, req, status); } | ^ 14 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http2_session.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:65:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 65 | SH2S_Event(TH2S_Data data, TArgs&&... args) : TBase(forward(args)...), m_Type(eData) , m_Data(move(data)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:139:61: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 139 | SH2S_Request(TH2S_WeakResponseQueue q) : response_queue(move(q)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:208:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 208 | queue->GetLock()->emplace(move(event)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:300:48: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 300 | m_Io->request_queue.GetLock()->emplace(move(event)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:42:9: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 42 | url(move(u)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:43:10: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 43 | cred(move(c)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:44:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 44 | headers(move(h)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:90:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 90 | m_ResponseQueue(move(response_queue)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:94:10: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 94 | Push(move(request)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:122:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 122 | Push(TH2S_RequestEvent(move(m_OutgoingData), m_ResponseQueue)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:197:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 197 | TH2S_ResponseEvent incoming(move(queue_locked->front())); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:210:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 210 | m_IncomingData = move(incoming.GetData()); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:239:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 239 | m_UpdateResponse(move(incoming.GetStart())); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:378:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 378 | m_SessionsByQueues.emplace(move(response_queue), *this); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:454:71: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 454 | headers.emplace(piecewise_construct, forward_as_tuple(move(n)), forward_as_tuple(1, move(v))); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:454:101: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 454 | headers.emplace(piecewise_construct, forward_as_tuple(move(n)), forward_as_tuple(1, move(v))); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:456:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 456 | hit->second.emplace_back(move(v)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:491:38: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 491 | Push(response_queue, move(it->headers)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:525:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 525 | TH2S_RequestEvent outgoing(move(queue_locked->front())); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:540:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 540 | if (new_session->Request(move(outgoing))) { | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:555:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 555 | auto l = [&](SH2S_IoStream& stream) { stream.pending.emplace(move(outgoing.GetData())); }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:593:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 593 | queue->GetLock()->emplace(move(event)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:617:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 617 | SH2S_Session::TAddrNCred addr_n_cred(SSocketAddress(move(host), port), request.cred); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:653:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 653 | req.x_UpdateResponse(move(headers), status_code, {}); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:665:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 665 | auto update_response = [&](CHttpHeaders::THeaders headers) { UpdateResponse(req, move(headers)); }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:672:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 672 | TH2S_RequestEvent request(SH2S_Request::SStart(req.m_Method, req.m_Url, move(cred), req.m_Headers->Get()), response_queue); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:674:56: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 674 | unique_ptr rw(new SH2S_ReaderWriter(move(update_response), move(response_queue), move(request))); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:674:79: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 674 | unique_ptr rw(new SH2S_ReaderWriter(move(update_response), move(response_queue), move(request))); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:674:101: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 674 | unique_ptr rw(new SH2S_ReaderWriter(move(update_response), move(response_queue), move(request))); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:677:27: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 677 | req.x_InitConnection2(move(stream)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:214:88: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 214 | static void s_OnAlloc(uv_handle_t* handle, size_t suggested_size, uv_buf_t* buf) { OnCallback(&SUv_Tcp::OnAlloc, handle, suggested_size, buf); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:215:85: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 215 | static void s_OnRead(uv_stream_t* stream, ssize_t nread, const uv_buf_t* buf) { OnCallback(&SUv_Tcp::OnRead, stream, nread, buf); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:216:58: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 216 | static void s_OnWrite(uv_write_t* req, int status) { OnCallback(&SUv_Tcp::OnWrite, req, status); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:217:62: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 217 | static void s_OnConnect(uv_connect_t* req, int status) { OnCallback(&SUv_Tcp::OnConnect, req, status); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:50:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 50 | TBase(move(other)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:94:10: note: in instantiation of member function 'ncbi::SH2S_Event::SH2S_Event' requested here 94 | Push(move(request)); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:55:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 55 | case eStart: new(&m_Start) TStart(move(other.m_Start)); break; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:56:45: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 56 | case eData: new(&m_Data) TH2S_Data(move(other.m_Data)); break; | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:65:57: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | SH2S_Event(TH2S_Data data, TArgs&&... args) : TBase(forward(args)...), m_Type(eData) , m_Data(move(data)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:122:14: note: in instantiation of function template specialization 'ncbi::SH2S_Event::SH2S_Event>>> &>' requested here 122 | Push(TH2S_RequestEvent(move(m_OutgoingData), m_ResponseQueue)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:65:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 65 | SH2S_Event(TH2S_Data data, TArgs&&... args) : TBase(forward(args)...), m_Type(eData) , m_Data(move(data)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:68:53: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 68 | SH2S_Event(EType type, TArgs&&... args) : TBase(forward(args)...), m_Type(type) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:137:22: note: in instantiation of function template specialization 'ncbi::SH2S_Event::SH2S_Event>>> &>' requested here 137 | Push(TH2S_RequestEvent(TH2S_RequestEvent::eEof, m_ResponseQueue)); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:50:11: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 50 | TBase(move(other)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:197:24: note: in instantiation of member function 'ncbi::SH2S_Event::SH2S_Event' requested here 197 | TH2S_ResponseEvent incoming(move(queue_locked->front())); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:55:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 55 | case eStart: new(&m_Start) TStart(move(other.m_Start)); break; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:56:45: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 56 | case eData: new(&m_Data) TH2S_Data(move(other.m_Data)); break; | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:65:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 65 | SH2S_Event(TH2S_Data data, TArgs&&... args) : TBase(forward(args)...), m_Type(eData) , m_Data(move(data)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:412:34: note: in instantiation of function template specialization 'ncbi::SH2S_Event::SH2S_Event<>' requested here 412 | Push(it->response_queue, TH2S_Data(begin, begin + len)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:62:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 62 | SH2S_Event(TStart start, TArgs&&... args) : TBase(forward(args)...), m_Type(eStart) , m_Start(move(start)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:491:38: note: in instantiation of function template specialization 'ncbi::SH2S_Event::SH2S_Event<>' requested here 491 | Push(response_queue, move(it->headers)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ | std:: /usr/include/c++/v1/tuple:1410:7: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Session::SUvNgHttp2_Session> &, bool &, std::map, std::owner_less>>>>> &>' requested here 1410 | second(std::forward<_Args2>(std::get<_I2>(__second_args))...) {} | ^ /usr/include/c++/v1/__utility/pair.h:282:9: note: in instantiation of function template specialization 'std::pair>, ncbi::SUvNgHttp2_Session>::pair> &, ncbi::SUv_Loop *&&, std::pair> &, bool &, std::map, std::owner_less>>>>> &, 0UL, 0UL, 1UL, 2UL, 3UL>' requested here 282 | : pair(__pc, | ^ /usr/include/c++/v1/__memory/allocator.h:173:24: note: in instantiation of function template specialization 'std::pair>, ncbi::SUvNgHttp2_Session>::pair> &, ncbi::SUv_Loop *&&, std::pair> &, bool &, std::map, std::owner_less>>>>> &>' requested here 173 | ::new ((void*)__p) _Up(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator>, ncbi::SUvNgHttp2_Session>, void *>>::construct>, ncbi::SUvNgHttp2_Session>, const std::piecewise_construct_t &, std::tuple> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__tree:1820:18: note: in instantiation of function template specialization 'std::allocator_traits>, ncbi::SUvNgHttp2_Session>, void *>>>::construct>, ncbi::SUvNgHttp2_Session>, const std::piecewise_construct_t &, std::tuple> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>, void>' requested here 1820 | __node_traits::construct(__na, _NodeTypes::__get_ptr(__h->__value_), std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__tree:1862:23: note: in instantiation of function template specialization 'std::__tree>, ncbi::SUvNgHttp2_Session>, std::__map_value_compare>, std::__value_type>, ncbi::SUvNgHttp2_Session>, std::less>>>, std::allocator>, ncbi::SUvNgHttp2_Session>>>::__construct_node> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 1862 | __node_holder __h = __construct_node(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/map:1853:20: note: in instantiation of function template specialization 'std::__tree>, ncbi::SUvNgHttp2_Session>, std::__map_value_compare>, std::__value_type>, ncbi::SUvNgHttp2_Session>, std::less>>>, std::allocator>, ncbi::SUvNgHttp2_Session>>>::__emplace_multi> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 1853 | return __tree_.__emplace_multi(std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:628:26: note: in instantiation of function template specialization 'std::multimap>, ncbi::SUvNgHttp2_Session>::emplace> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 628 | auto it = m_Sessions.emplace(piecewise_construct, forward_as_tuple(addr_n_cred), forward_as_tuple(&m_Loop, addr_n_cred, https, m_SessionsByQueues)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:305:13: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 305 | forward(callbacks)..., | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:9: note: in instantiation of function template specialization 'ncbi::SH2S_Session::SH2S_Session' requested here 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ /usr/include/c++/v1/tuple:1410:7: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Session::SUvNgHttp2_Session> &, bool &, std::map, std::owner_less>>>>> &>' requested here 1410 | second(std::forward<_Args2>(std::get<_I2>(__second_args))...) {} | ^ /usr/include/c++/v1/__utility/pair.h:282:9: note: in instantiation of function template specialization 'std::pair>, ncbi::SUvNgHttp2_Session>::pair> &, ncbi::SUv_Loop *&&, std::pair> &, bool &, std::map, std::owner_less>>>>> &, 0UL, 0UL, 1UL, 2UL, 3UL>' requested here 282 | : pair(__pc, | ^ /usr/include/c++/v1/__memory/allocator.h:173:24: note: in instantiation of function template specialization 'std::pair>, ncbi::SUvNgHttp2_Session>::pair> &, ncbi::SUv_Loop *&&, std::pair> &, bool &, std::map, std::owner_less>>>>> &>' requested here 173 | ::new ((void*)__p) _Up(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator>, ncbi::SUvNgHttp2_Session>, void *>>::construct>, ncbi::SUvNgHttp2_Session>, const std::piecewise_construct_t &, std::tuple> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__tree:1820:18: note: in instantiation of function template specialization 'std::allocator_traits>, ncbi::SUvNgHttp2_Session>, void *>>>::construct>, ncbi::SUvNgHttp2_Session>, const std::piecewise_construct_t &, std::tuple> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>, void>' requested here 1820 | __node_traits::construct(__na, _NodeTypes::__get_ptr(__h->__value_), std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__tree:1862:23: note: in instantiation of function template specialization 'std::__tree>, ncbi::SUvNgHttp2_Session>, std::__map_value_compare>, std::__value_type>, ncbi::SUvNgHttp2_Session>, std::less>>>, std::allocator>, ncbi::SUvNgHttp2_Session>>>::__construct_node> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 1862 | __node_holder __h = __construct_node(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/map:1853:20: note: in instantiation of function template specialization 'std::__tree>, ncbi::SUvNgHttp2_Session>, std::__map_value_compare>, std::__value_type>, ncbi::SUvNgHttp2_Session>, std::less>>>, std::allocator>, ncbi::SUvNgHttp2_Session>>>::__emplace_multi> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 1853 | return __tree_.__emplace_multi(std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:628:26: note: in instantiation of function template specialization 'std::multimap>, ncbi::SUvNgHttp2_Session>::emplace> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 628 | auto it = m_Sessions.emplace(piecewise_construct, forward_as_tuple(addr_n_cred), forward_as_tuple(&m_Loop, addr_n_cred, https, m_SessionsByQueues)); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:305:13: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 305 | forward(callbacks)..., | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:305:13: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 305 | forward(callbacks)..., | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:305:13: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 305 | forward(callbacks)..., | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:298:5: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_SessionBase::SUvNgHttp2_SessionBase' requested here 298 | SUvNgHttp2_SessionBase( | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:9: note: in instantiation of function template specialization 'ncbi::SH2S_Session::SH2S_Session' requested here 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ /usr/include/c++/v1/tuple:1410:7: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Session::SUvNgHttp2_Session> &, bool &, std::map, std::owner_less>>>>> &>' requested here 1410 | second(std::forward<_Args2>(std::get<_I2>(__second_args))...) {} | ^ /usr/include/c++/v1/__utility/pair.h:282:9: note: in instantiation of function template specialization 'std::pair>, ncbi::SUvNgHttp2_Session>::pair> &, ncbi::SUv_Loop *&&, std::pair> &, bool &, std::map, std::owner_less>>>>> &, 0UL, 0UL, 1UL, 2UL, 3UL>' requested here 282 | : pair(__pc, | ^ /usr/include/c++/v1/__memory/allocator.h:173:24: note: in instantiation of function template specialization 'std::pair>, ncbi::SUvNgHttp2_Session>::pair> &, ncbi::SUv_Loop *&&, std::pair> &, bool &, std::map, std::owner_less>>>>> &>' requested here 173 | ::new ((void*)__p) _Up(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator>, ncbi::SUvNgHttp2_Session>, void *>>::construct>, ncbi::SUvNgHttp2_Session>, const std::piecewise_construct_t &, std::tuple> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__tree:1820:18: note: in instantiation of function template specialization 'std::allocator_traits>, ncbi::SUvNgHttp2_Session>, void *>>>::construct>, ncbi::SUvNgHttp2_Session>, const std::piecewise_construct_t &, std::tuple> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>, void>' requested here 1820 | __node_traits::construct(__na, _NodeTypes::__get_ptr(__h->__value_), std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__tree:1862:23: note: in instantiation of function template specialization 'std::__tree>, ncbi::SUvNgHttp2_Session>, std::__map_value_compare>, std::__value_type>, ncbi::SUvNgHttp2_Session>, std::less>>>, std::allocator>, ncbi::SUvNgHttp2_Session>>>::__construct_node> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 1862 | __node_holder __h = __construct_node(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/map:1853:20: note: in instantiation of function template specialization 'std::__tree>, ncbi::SUvNgHttp2_Session>, std::__map_value_compare>, std::__value_type>, ncbi::SUvNgHttp2_Session>, std::less>>>, std::allocator>, ncbi::SUvNgHttp2_Session>>>::__emplace_multi> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 1853 | return __tree_.__emplace_multi(std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:628:26: note: in instantiation of function template specialization 'std::multimap>, ncbi::SUvNgHttp2_Session>::emplace> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 628 | auto it = m_Sessions.emplace(piecewise_construct, forward_as_tuple(addr_n_cred), forward_as_tuple(&m_Loop, addr_n_cred, https, m_SessionsByQueues)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:493:79: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 493 | return [this, member](TArgs&&... args) -> TR { return (this->*member)(forward(args)...); }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:493:54: note: while substituting into a lambda expression here 493 | return [this, member](TArgs&&... args) -> TR { return (this->*member)(forward(args)...); }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:547:13: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_SessionBase::BindThis' requested here 547 | BindThis(&SUvNgHttp2_SessionBase::OnConnect), | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:298:5: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_SessionBase::SUvNgHttp2_SessionBase' requested here 298 | SUvNgHttp2_SessionBase( | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:9: note: in instantiation of function template specialization 'ncbi::SH2S_Session::SH2S_Session' requested here 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ /usr/include/c++/v1/tuple:1410:7: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Session::SUvNgHttp2_Session> &, bool &, std::map, std::owner_less>>>>> &>' requested here 1410 | second(std::forward<_Args2>(std::get<_I2>(__second_args))...) {} | ^ /usr/include/c++/v1/__utility/pair.h:282:9: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 282 | : pair(__pc, | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator>, ncbi::SUvNgHttp2_Session>, void *>>::construct>, ncbi::SUvNgHttp2_Session>, const std::piecewise_construct_t &, std::tuple> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__tree:1820:18: note: in instantiation of function template specialization 'std::allocator_traits>, ncbi::SUvNgHttp2_Session>, void *>>>::construct>, ncbi::SUvNgHttp2_Session>, const std::piecewise_construct_t &, std::tuple> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>, void>' requested here 1820 | __node_traits::construct(__na, _NodeTypes::__get_ptr(__h->__value_), std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__tree:1862:23: note: in instantiation of function template specialization 'std::__tree>, ncbi::SUvNgHttp2_Session>, std::__map_value_compare>, std::__value_type>, ncbi::SUvNgHttp2_Session>, std::less>>>, std::allocator>, ncbi::SUvNgHttp2_Session>>>::__construct_node> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 1862 | __node_holder __h = __construct_node(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/map:1853:20: note: in instantiation of function template specialization 'std::__tree>, ncbi::SUvNgHttp2_Session>, std::__map_value_compare>, std::__value_type>, ncbi::SUvNgHttp2_Session>, std::less>>>, std::allocator>, ncbi::SUvNgHttp2_Session>>>::__emplace_multi> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 1853 | return __tree_.__emplace_multi(std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:628:26: note: in instantiation of function template specialization 'std::multimap>, ncbi::SUvNgHttp2_Session>::emplace> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 628 | auto it = m_Sessions.emplace(piecewise_construct, forward_as_tuple(addr_n_cred), forward_as_tuple(&m_Loop, addr_n_cred, https, m_SessionsByQueues)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:493:79: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 493 | return [this, member](TArgs&&... args) -> TR { return (this->*member)(forward(args)...); }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:493:54: note: while substituting into a lambda expression here 493 | return [this, member](TArgs&&... args) -> TR { return (this->*member)(forward(args)...); }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:548:13: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_SessionBase::BindThis' requested here 548 | BindThis(&SUvNgHttp2_SessionBase::OnRead), | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:298:5: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_SessionBase::SUvNgHttp2_SessionBase' requested here 298 | SUvNgHttp2_SessionBase( | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:9: note: in instantiation of function template specialization 'ncbi::SH2S_Session::SH2S_Session' requested here 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ /usr/include/c++/v1/tuple:1410:7: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Session::SUvNgHttp2_Session> &, bool &, std::map, std::owner_less>>>>> &>' requested here 1410 | second(std::forward<_Args2>(std::get<_I2>(__second_args))...) {} | ^ /usr/include/c++/v1/__utility/pair.h:282:9: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 282 | : pair(__pc, | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator>, ncbi::SUvNgHttp2_Session>, void *>>::construct>, ncbi::SUvNgHttp2_Session>, const std::piecewise_construct_t &, std::tuple> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__tree:1820:18: note: in instantiation of function template specialization 'std::allocator_traits>, ncbi::SUvNgHttp2_Session>, void *>>>::construct>, ncbi::SUvNgHttp2_Session>, const std::piecewise_construct_t &, std::tuple> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>, void>' requested here 1820 | __node_traits::construct(__na, _NodeTypes::__get_ptr(__h->__value_), std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__tree:1862:23: note: in instantiation of function template specialization 'std::__tree>, ncbi::SUvNgHttp2_Session>, std::__map_value_compare>, std::__value_type>, ncbi::SUvNgHttp2_Session>, std::less>>>, std::allocator>, ncbi::SUvNgHttp2_Session>>>::__construct_node> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 1862 | __node_holder __h = __construct_node(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/map:1853:20: note: in instantiation of function template specialization 'std::__tree>, ncbi::SUvNgHttp2_Session>, std::__map_value_compare>, std::__value_type>, ncbi::SUvNgHttp2_Session>, std::less>>>, std::allocator>, ncbi::SUvNgHttp2_Session>>>::__emplace_multi> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 1853 | return __tree_.__emplace_multi(std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:628:26: note: in instantiation of function template specialization 'std::multimap>, ncbi::SUvNgHttp2_Session>::emplace> &>, std::tuple> &, bool &, std::map, std::owner_less>>>>> &>>' requested here 628 | auto it = m_Sessions.emplace(piecewise_construct, forward_as_tuple(addr_n_cred), forward_as_tuple(&m_Loop, addr_n_cred, https, m_SessionsByQueues)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:493:79: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 493 | return [this, member](TArgs&&... args) -> TR { return (this->*member)(forward(args)...); }; | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:62:55: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 62 | SH2S_Event(TStart start, TArgs&&... args) : TBase(forward(args)...), m_Type(eStart) , m_Start(move(start)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:672:23: note: in instantiation of function template specialization 'ncbi::SH2S_Event::SH2S_Event>>> &>' requested here 672 | TH2S_RequestEvent request(SH2S_Request::SStart(req.m_Method, req.m_Url, move(cred), req.m_Headers->Get()), response_queue); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp:32: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session_impl.hpp:62:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 62 | SH2S_Event(TStart start, TArgs&&... args) : TBase(forward(args)...), m_Type(eStart) , m_Start(move(start)) {} | ^ | std:: 77 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_uv_nghttp2.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_uv_nghttp2.cpp -o ncbi_uv_nghttp2.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ncbi_http2_session.cpp -o ncbi_http2_session.o /bin/rm -f libxxconnect2.a .libxxconnect2.a.stamp ar cr libxxconnect2.a ncbi_uv_nghttp2.o ncbi_http2_session.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxxconnect2.a /bin/ln -f .xxconnect2.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xxconnect2.dep /bin/rm -f libxxconnect2-dll.so .libxxconnect2-dll.so.stamp /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -shared -o libxxconnect2-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O -fPIC ncbi_uv_nghttp2.o ncbi_http2_session.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lxconnect -luv -lnghttp2 -ldw -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect2-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect2-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxxconnect2-dll.so /bin/ln -f .xxconnect2-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xxconnect2-dll.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect TMPL=xthrserv all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/threaded_server.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/threaded_server.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/threaded_server.cpp:47:20: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] 47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:1215:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' 1215 | #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' 1209 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/threaded_server.cpp:52:5: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] 52 | CThreadedServer& m_Server; // NCBI_FAKE_WARNING | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/threaded_server.hpp:77:1: note: 'CThreadedServer' has been explicitly marked deprecated here 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:1215:31: note: expanded from macro 'NCBI_DEPRECATED_CLASS' 1215 | #define NCBI_DEPRECATED_CLASS NCBI_DEPRECATED_CTOR(class) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' 1209 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/threaded_server.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/threaded_server.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/threaded_server.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/threaded_server.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_conn_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/server.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/server.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/server.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/server_monitor.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/server_monitor.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/server_monitor.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/server_monitor.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/server_monitor.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/server_monitor.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connection_pool.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/error_codes.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connection_pool.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/error_codes.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connection_pool.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/error_codes.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/threaded_server.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/server.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connection_pool.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/server.cpp -o server.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -C services all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services/test/Makefile gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services TMPL=xconnserv export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services TMPL=xconnserv flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services TMPL=xconnserv all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker.cpp:595:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 595 | m_Masters.insert(move(address)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 9 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_client_factory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_client_factory.cpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/ns_client_factory.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_client_factory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_client_factory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_main_loop.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_main_loop.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_main_loop.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_main_loop.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_main_loop.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_cleanup.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_cleanup.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_cleanup.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_cleanup.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_cleanup.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_cleanup.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_cleanup.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_cleanup.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_cleanup.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_offline_mode.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_offline_mode.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_offline_mode.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_offline_mode.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_offline_mode.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_control_thread.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_globals.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_globals.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_globals.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_globals.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_globals.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_globals.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_globals.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_globals.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_rw_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_rw_impl.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_rw_impl.cpp:85:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 85 | m_Writer = move(writer); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_rw_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_rw_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/remote_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/remote_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/remote_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/remote_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_rw_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections.cpp:315:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 315 | m_Address(move(address)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections.cpp:317:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 317 | m_ThrottleStats(move(throttle_params)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections.cpp:368:14: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 368 | rv = move(args.GetArgs()); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 11 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp:398:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 398 | Construct(m_ServerPool->FindOrCreateServerImpl(move(address))); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp:746:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 746 | m_Impl->m_EnforcedServer = move(address); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp:806:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 806 | auto* server = new SNetServerInPool(move(server_address), m_PropCreator(), m_ThrottleParams); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp:826:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 826 | auto* server = FindOrCreateServerImpl(m_EnforcedServer.host == 0 ? move(server_address) : m_EnforcedServer); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp:835:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 835 | return m_ServerPool->GetServer(this, move(server_address)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 13 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.cpp:87:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 87 | auto result = m_SubConfigs.emplace(section, move(sub_config)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_executor.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_admin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_key.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_key.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_key.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_key.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_expt.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_map.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_expt.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_map.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_expt.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_map.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_key.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_key.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_key.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_params.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_params.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_params.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_params.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_params.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_params.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_params.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_params.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_admin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_search.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_search.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_search.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_search.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_protocol_parser.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_protocol_parser.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_protocol_parser.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/util.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/util.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/util.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/util.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/util.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/util.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/clparser.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/clparser.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/clparser.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/json_over_uttp.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/json_over_uttp.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/json_over_uttp.cpp:1052:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1052 | auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/json_over_uttp.cpp:1052:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1052 | auto val = standard_json ? NStr::JsonDecode(move(str), &len) : NStr::ParseQuoted(move(str), &len); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/json_over_uttp.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/json_over_uttp.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/json_over_uttp.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/json_over_uttp.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/impl/netstorage_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorageobjectloc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netstorage.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/json_over_uttp.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorageobjectloc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorageobjectloc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netstorage.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/json_over_uttp.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorageobjectloc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netstorage.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/json_over_uttp.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netstorage.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/json_over_uttp.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netstorage.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netstorage.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/json_over_uttp.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netstorage.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/json_over_uttp.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_output_parser.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/ns_output_parser.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_output_parser.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/ns_output_parser.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_output_parser.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/ns_output_parser.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_output_parser.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/ns_output_parser.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_job_serializer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/ns_job_serializer.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_job_serializer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/ns_job_serializer.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_job_serializer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/ns_job_serializer.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_job_serializer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/ns_job_serializer.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_impl.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_impl.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_impl.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_v0.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_impl.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_v0.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_impl.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_v0.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_impl.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:180:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 180 | SThrottleStats(SThrottleParams params) : m_Params(move(params)) { Reset(); } | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/neticache_client.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netcache_rw.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/netservice_params.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/neticache_client.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -shared -o libncbi_xcache_netcache-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O -fPIC neticache_client.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -ldw -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/blob_storage_netcache.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/blob_storage_netcache.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/blob_storage_netcache.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/blob_storage_netcache.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/blob_storage_netcache.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/blob_storage_netcache.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/blob_storage_netcache.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/blob_storage_netcache.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcache_api.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_key.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/compound_id.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netcomponent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/blob_storage_netcache.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/services' /usr/local/bin/gmake -C ext all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext/test/Makefile gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext TMPL=connext export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext TMPL=xconnext export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext TMPL=connext flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext TMPL=xconnext flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext TMPL=connext all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_ifconf.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_crypt.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_dblb.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_localnet.c. /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /bin/rm -f libconnext.a .libconnext.a.stamp ar cr libconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnext.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libconnext.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libconnext.a /bin/ln -f .connext.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.connext.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext TMPL=xconnext all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ext/ncbi_dblb_svcmapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:336:34: warning: taking address of packed member 'status' of class or structure 'SLBSM_HostLoad' may result in an unaligned pointer value [-Waddress-of-packed-member] 336 | HINFO_Status(hinfo, &load.status); | ^~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ext/ncbi_dblb_svcmapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ext/ncbi_dblb_svcmapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.a .libxconnext.a.stamp ar cr libxconnext.a ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_localnet.o ncbi_dblb_svcmapper.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxconnext.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxconnext.a /bin/ln -f .xconnext.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xconnext.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/ext' /usr/local/bin/gmake -C test all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect/test' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -C cgi all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi/test/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi TMPL=cgi export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi TMPL=fcgi export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi TMPL=cgi flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi TMPL=fcgi flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi TMPL=cgi all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbicgi.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbicgi.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbicgi.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgiapp.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgiapp.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgiapp.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgiapp.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgiapp.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgiapp.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgictx.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgictx.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgictx.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbicgir.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/request_ctx.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbicgir.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/request_ctx.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbicgir.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/request_ctx.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbires.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbires.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbires.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ref_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/ref_args.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ref_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/ref_args.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ref_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/ref_args.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_run.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgiapp.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_run.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgiapp.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_run.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgiapp.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgi_util.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/ncbi_url.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_url.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgi_util.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/ncbi_url.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_url.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgi_util.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/ncbi_url.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_url.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_serial.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_serial.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_serial.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_session.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_exception.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgi_exception.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_exception.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgi_exception.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_exception.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgi_exception.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgiapp_cached.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager_store.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgiapp_cached.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager_store.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgiapp_cached.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager_store.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_entry_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/impl/cgi_entry_reader.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/ncbicgi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_entry_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/impl/cgi_entry_reader.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/ncbicgi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_entry_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/impl/cgi_entry_reader.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/ncbicgi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/user_agent.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/user_agent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version_api.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/user_agent.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/user_agent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version_api.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/user_agent.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/user_agent.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version_api.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbicgi.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/user_agent.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ 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-DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi TMPL=fcgi all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/fcgi_run.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgiapp.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/fcgi_run.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgiapp.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/fcgi_run.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/cgiapp.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/fcgi_run.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_XFCGI_EXPORTS -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -C test all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/cgi' /usr/local/bin/gmake -C html all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/demo/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/demo/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html/demo/Makefile gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html TMPL=html export-headers gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html TMPL=html flag-stamps gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html TMPL=html all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/node.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/node.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/node.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/html.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/html.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/html.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/htmlhelper.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/htmlhelper.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/htmlhelper.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/page.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/page.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/page.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/pager.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/pager.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/pager.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/selection.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/ncbicgi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/selection.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/ncbicgi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/selection.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/cgi/ncbicgi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/components.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/components.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/components.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/components.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/components.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/components.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/commentdiag.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/commentdiag.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/commentdiag.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/commentdiag.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/commentdiag.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/commentdiag.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/indentstream.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/indentstream.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/indentstream.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/indentstream.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/indentstream.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/indentstream.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/html_exception.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html_exception.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/html_exception.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html_exception.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/html_exception.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html_exception.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/writer_htmlenc.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/writer_htmlenc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/writer_htmlenc.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/writer_htmlenc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/writer_htmlenc.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/writer_htmlenc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/node.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/html.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/page.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/pager.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/selection.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/components.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/indentstream.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/html_exception.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/writer_htmlenc.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/node.cpp -o node.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/html.cpp -o html.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/page.cpp -o page.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/pager.cpp -o pager.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/selection.cpp -o selection.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/components.cpp -o components.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/indentstream.cpp -o indentstream.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/html_exception.cpp -o html_exception.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -C test all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html/test' /usr/local/bin/gmake -C demo all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html/demo' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/html' /usr/local/bin/gmake -C build-system all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system' /usr/local/bin/gmake -C helpers all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `flag-stamps'. /usr/local/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/helpers' /usr/local/bin/gmake -C project_tree_builder all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.hpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.hpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.hpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_site.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_site.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_site.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:33: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:33: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:33: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_site.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_site.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_site.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:33: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:33: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.hpp:33: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/resolver.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.hpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/resolver.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.hpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/resolver.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.hpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/resolver.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.hpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/resolver.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.hpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/resolver.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.hpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_projects.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_projects.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_projects.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.hpp:32: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.hpp:32: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.hpp:32: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/configurable_file.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/configurable_file.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/configurable_file.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de 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/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/local/lib -lpcre -ldw -lm -pthread -o project_tree_builder strip project_tree_builder /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/local/bin/gmake -C msbuild all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj mark-as-disabled gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/build-system' /usr/local/bin/gmake -C serial all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/soap/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/soap/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT soap/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/soap/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial TMPL=serial export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial TMPL=cserial export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial TMPL=serial flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial TMPL=cserial flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial TMPL=serial all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/hookdata.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/hookdata.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/hookdata.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/hookdatakey.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/hookdatakey.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/hookdatakey.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typeinfo.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typeinfo.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typeinfo.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_process.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/interprocess_lock.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectiter.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectiter.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectiter.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectiter.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objectiter.hpp:578:18: warning: private field 'm_VariantIndex' is not used [-Wunused-private-field] 578 | TMemberIndex m_VariantIndex; | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectio.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectio.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectio.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typeref.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/typeref.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typeref.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/typeref.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typeref.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/typeref.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typemap.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typemap.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typemap.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 99 | info->SetIOFunctions(&Read, &Write, &Copy, &Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:556:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here 556 | CPrimitiveTypeFunctions::SetIOFunctions(this); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 99 | info->SetIOFunctions(&Read, &Write, &Copy, &Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:651:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here 651 | CPrimitiveTypeFunctions::SetIOFunctions(this); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 705 | &CParent::Copy, &CParent::Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:969:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here 969 | DECLARE_STD_INT_TYPE(signed char) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' 966 | return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 705 | &CParent::Copy, &CParent::Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:970:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here 970 | DECLARE_STD_INT_TYPE(unsigned char) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' 966 | return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 705 | &CParent::Copy, &CParent::Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:971:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here 971 | DECLARE_STD_INT_TYPE(short) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' 966 | return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 705 | &CParent::Copy, &CParent::Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:972:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here 972 | DECLARE_STD_INT_TYPE(unsigned short) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' 966 | return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 705 | &CParent::Copy, &CParent::Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:973:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here 973 | DECLARE_STD_INT_TYPE(int) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' 966 | return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 705 | &CParent::Copy, &CParent::Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:974:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here 974 | DECLARE_STD_INT_TYPE(unsigned) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' 966 | return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 705 | &CParent::Copy, &CParent::Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:979:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here 979 | DECLARE_STD_INT_TYPE(Int8) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' 966 | return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:705:60: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 705 | &CParent::Copy, &CParent::Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:980:1: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoIntFunctions::CreateTypeInfo' requested here 980 | DECLARE_STD_INT_TYPE(Uint8) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:966:50: note: expanded from macro 'DECLARE_STD_INT_TYPE' 966 | return CPrimitiveTypeInfoIntFunctions::CreateTypeInfo(); \ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 99 | info->SetIOFunctions(&Read, &Write, &Copy, &Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:1026:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here 1026 | CPrimitiveTypeFunctions::SetIOFunctions(this); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 99 | info->SetIOFunctions(&Read, &Write, &Copy, &Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:1056:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here 1056 | CPrimitiveTypeFunctions::SetIOFunctions(this); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:99:57: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 99 | info->SetIOFunctions(&Read, &Write, &Copy, &Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:1092:43: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::SetIOFunctions' requested here 1092 | CPrimitiveTypeFunctions::SetIOFunctions(this); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 1404 | &TFunctions::Copy, &TFunctions::Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:1449:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here 1449 | return new CPrimitiveTypeInfoCharPtr(); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:147:24: warning: variable 'data' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] 147 | in.SkipStd(data); | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:1404:52: note: in instantiation of member function 'ncbi::CPrimitiveTypeFunctions::Skip' requested here 1404 | &TFunctions::Copy, &TFunctions::Skip); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp:1460:16: note: in instantiation of member function 'ncbi::CPrimitiveTypeInfoCharPtr::CPrimitiveTypeInfoCharPtr' requested here 1460 | return new CPrimitiveTypeInfoCharPtr(); | ^ 18 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/enumerated.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/enumerated.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/enumerated.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/ptrinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/ptrinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/typeinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/ptrinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/ptrinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/typeinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/ptrinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/ptrinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/typeinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/autoptrinfo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/autoptrinfo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/autoptrinfo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/continfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/continfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/continfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stltypes.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/stltypesimpl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stltypes.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/stltypesimpl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stltypes.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/stltypesimpl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/memberid.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/memberid.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/memberid.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/memberlist.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/memberlist.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/memberlist.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/classinfob.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/classinfob.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/classinfob.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/member.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/member.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/member.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/classinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/classinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/classinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/variant.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/variant.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/variant.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/choice.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/choice.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/classinfob.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/choice.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/choice.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/classinfob.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/choice.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/choice.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/classinfob.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/choiceptr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/choiceptr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/choiceptr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/aliasinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/aliasinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/ptrinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/typeinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/aliasinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/aliasinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/ptrinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/typeinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/aliasinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/aliasinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/ptrinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/typeinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistr.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistr.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistr.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostr.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostr.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostr.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objcopy.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objcopy.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objcopy.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/iterator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/iterator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/iterator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serial.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serial.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serial.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/delaybuf.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/delaybuf.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/delaybuf.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/pack_string.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/pack_string.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objhook.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/pack_string.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/pack_string.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objhook.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/pack_string.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/pack_string.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objhook.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/exception.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/exception.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/exception.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/exception.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/exception.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/exception.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objhook.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objhook.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objhook.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objlist.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objlist.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objlist.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objstack.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objstack.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objstack.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrasn.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrasn.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrasn.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrasn.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrasn.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrasn.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrasnb.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrasnb.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrasnb.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrasnb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrasnb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrasnb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrxml.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrxml.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrxml.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrxml.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrxml.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrxml.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrjson.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrjson.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrjson.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrjson.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrjson.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrjson.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serializable.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serializable.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serializable.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serializable.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serializable.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serializable.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serialobject.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serialobject.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serialobject.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_safe_static.hpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/pathhook.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/pathhook.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/pathhook.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/pathhook.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/pathhook.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/pathhook.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/rpcbase.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/rpcbase.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/rpcbase.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/hookdata.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectio.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typeref.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typemap.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/continfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/memberid.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/member.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/variant.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/choice.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/iterator.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serial.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/exception.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objhook.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objlist.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objstack.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serializable.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/rpcbase.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/hookdata.cpp -o hookdata.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectiter.cpp -o objectiter.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objectio.cpp -o objectio.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typeref.cpp -o typeref.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/typemap.cpp -o typemap.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe 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-D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/objlist.cpp -o objlist.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de 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-D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/pathhook.cpp -o pathhook.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial TMPL=cserial all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/asntypes.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/asntypes.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/asntypes.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serialasn.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serialasn.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serialasn.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/asntypes.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serialasn.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/asntypes.cpp -o asntypes.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -C datatool all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool TMPL=datatool flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool TMPL=datatool all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/datatool.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/datatool.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/datatool.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/namespace.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/namespace.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/namespace.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/statictype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/statictype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/statictype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumtype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumtype.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumtype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumtype.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumtype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumtype.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/reftype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/reftype.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/reftype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/reftype.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/reftype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/reftype.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/unitype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/stltypes.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/unitype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/stltypes.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/unitype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/stltypes.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/blocktype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/blocktype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/blocktype.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choicetype.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choicetype.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choicetype.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/ptrstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/ptrstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/ptrstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/ptrstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/ptrstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/ptrstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/stdstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/stdstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/stdstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/stdstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/stdstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/stdstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/classstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/datatool.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/classstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/datatool.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/classstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/datatool.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/stlstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/stlstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/stlstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choicestr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choicestr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choicestr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choiceptrstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choiceptrstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choiceptrstr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/value.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/value.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/value.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/mcontainer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/mcontainer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/mcontainer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/mcontainer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/mcontainer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/mcontainer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/module.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/module.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/module.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/moduleset.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/moduleset.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/moduleset.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/generate.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/generate.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/generate.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/filecode.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/filecode.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/filecode.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/code.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/code.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/code.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/code.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/code.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/code.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/fileutil.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/fileutil.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/fileutil.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/aparser.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/aparser.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/aparser.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/parser.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/parser.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/parser.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/parser.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/parser.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/parser.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/lexer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/lexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/lexer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/lexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/lexer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/lexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/comments.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/comments.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/comments.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/srcutil.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/srcutil.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/srcutil.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdaux.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdaux.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdaux.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdaux.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdaux.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdaux.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/rpcgen.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/rpcgen.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/rpcgen.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/aliasstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/aliasstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/aliasstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdlexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdlexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdlexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdllexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdllexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdllexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdllexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdllexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdllexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdlparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdlparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdlparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdlstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdlstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdlstr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdlexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdlexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdlexer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/alexer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdparser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.hpp:35: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.hpp:35: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.hpp:35: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_merger.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_merger.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_node.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_merger.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_merger.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_node.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_merger.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_merger.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_node.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_node.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/aliasstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_node.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/aliasstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_node.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/aliasstr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp:185: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp:185: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp:185: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/datatool.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for 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/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for 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/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/type.cpp -o type.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de 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/usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -ldw -lm -pthread -o datatool strip datatool /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f datatool /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/datatool' /usr/local/bin/gmake -C test all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/test' /usr/local/bin/gmake -C soap all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/soap' /usr/local/bin/gmake -C grpc_integration all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/grpc_integration/grpc_integration.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/grpc_integration/impl/grpc_support.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/grpc_integration/grpc_integration.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/grpc_integration/impl/grpc_support.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/grpc_integration/grpc_integration.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/grpc_integration/impl/grpc_support.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libgrpc_integration.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.grpc_integration.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial/grpc_integration' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial' /usr/local/bin/gmake -C db all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/bdb/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/bdb/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT bdb/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/bdb/Makefile /usr/local/bin/gmake -C sqlite all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/sqlite TMPL=sqlitewrapp all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/sqlite' /usr/local/bin/gmake -C bdb all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/bdb' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/db' /usr/local/bin/gmake -C dbapi all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/simple/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/simple/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT simple/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/simple/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/lang_bind/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/test/Makefile gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi TMPL=dbapi export-headers gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi TMPL=dbapi flag-stamps gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi TMPL=dbapi all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/variant.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/variant.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/variant.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/variant.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/variant.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/variant.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/active_obj.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/active_obj.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/active_obj.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/active_obj.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/active_obj.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/active_obj.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/dbapi.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/dbapi.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/dbapi.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver_mgr.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver_mgr.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver_mgr.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/err_handler.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/err_handler.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/err_handler.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/err_handler.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/err_handler.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/err_handler.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/ds_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/error_codes.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/ds_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/error_codes.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/ds_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/error_codes.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/stmt_impl.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/stmt_impl.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/stmt_impl.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rs_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rs_impl.cpp:261:41: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] 261 | var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here 541 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rs_impl.cpp:384:45: warning: 'GetBlobDescriptor' is deprecated [-Wdeprecated-declarations] 384 | unique_ptr desc(m_rs->GetBlobDescriptor()); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:541:5: note: 'GetBlobDescriptor' has been explicitly marked deprecated here 541 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rs_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rs_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rsmeta_impl.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/exception.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rsmeta_impl.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/exception.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rsmeta_impl.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/exception.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/cstmt_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/cstmt_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/cstmt_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bytestreambuf.cpp:33: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bytestreambuf.cpp:142:19: warning: variable 'total' set but not used [-Wunused-but-set-variable] 142 | static size_t total = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bytestreambuf.cpp:33: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bytestreambuf.cpp:33: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/blobstream.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/blobstream.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bytestreambuf.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/blobstream.cpp:85:26: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] 85 | ->SetCmd(curCmd->SendDataCmd(item_num, datasize, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here 890 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/blobstream.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/blobstream.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bytestreambuf.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/blobstream.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/blobstream.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bytestreambuf.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/cursor_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/cursor_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/cursor_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bulkinsert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bulkinsert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bulkinsert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rw_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rw_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rw_impl.cpp:88:25: warning: 'SendDataCmd' is deprecated [-Wdeprecated-declarations] 88 | m_dataCmd = curCmd->SendDataCmd(item_num, datasize, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:890:5: note: 'SendDataCmd' has been explicitly marked deprecated here 890 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rw_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rw_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rw_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rw_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/dbapi.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/variant.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rw_impl.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/variant.cpp -o variant.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C driver all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/util/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT util/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/mysql/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT mysql/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/samples/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT samples/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/handle_stack.cpp:34: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/handle_stack.cpp:34: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/handle_stack.cpp:34: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/numeric_convert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/numeric_convert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/numeric_convert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/parameters.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/parameters.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/parameters.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/exception.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/exception.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/exception.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/exception.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/exception.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/exception.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/interfaces.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/interfaces.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/interfaces.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/public.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/public.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/public.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/types.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/types.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/types.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/types.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/types.cpp:1122:13: note: in instantiation of default argument for 'basic_string' required here 1122 | typedef basic_string TStr; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/types.cpp:1171:21: note: in instantiation of function template specialization 'ncbi::get_string_size_varchar' requested here 1171 | : CDB_String(s, get_string_size_varchar(s.data(), l)) | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/memory_store.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/error_codes.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/memory_store.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/error_codes.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/memory_store.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/error_codes.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/driver_mgr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidll.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/driver_mgr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidll.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/driver_mgr.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidll.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_conn_factory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_conn_factory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_conn_factory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_svc_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_conn_factory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_svc_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_conn_factory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_svc_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_conn_factory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_cmd.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_cmd.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_cmd.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_cmd.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_cmd.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_cmd.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_result.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_result.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_result.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/error_codes.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/error_codes.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/error_codes.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_object_convert.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/types.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_object_convert.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/types.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_object_convert.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/types.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_pool_balancer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_pool_balancer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_pool_balancer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/public.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/plugin_manager.hpp:70: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp:36: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/dbapi/driver/impl/dbapi_pool_balancer.hpp:85:26: warning: private field 'm_IsPooled' is not used [-Wunused-private-field] 85 | bool m_IsPooled; | ^ 4 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/handle_stack.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -ldw -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C util all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/local/bin/gmake -C ctlib all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/local/bin/gmake -C ftds100 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /usr/local/bin/gmake -C ftds-default all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/local/bin/gmake -C mysql all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/local/bin/gmake -C odbc all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc mark-as-disabled gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/local/bin/gmake -C samples all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/driver' /usr/local/bin/gmake -C simple all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/simple' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/simple' /usr/local/bin/gmake -C lang_bind all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/local/bin/gmake -C test all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/dbapi' /usr/local/bin/gmake -C objects all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/Makefile.sources builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects all Warning: (810.1) No service name provided for CTrackMgrClient gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/local/bin/gmake "; export MAKE; \ ( cd $i && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqblock/seqblock.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqres/seqres.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqblock' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqblock' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqres' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqres' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtable' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtable' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -C general all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh general all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general TMPL=general export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general TMPL=general flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general TMPL=general all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/Date.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/Date.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/Date.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Date.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Date_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/Date_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/Date_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/Date_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/uoconv.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/uoconv.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objectinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/uoconv.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/uoconv.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objectinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/uoconv.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/uoconv.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objectinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/uoconv.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general__.cpp -o general__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general___.cpp -o general___.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general/test' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/general' /usr/local/bin/gmake -C biblio all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh biblio all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio TMPL=biblio export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio TMPL=biblio flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio TMPL=biblio all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/Affil.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/Affil.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/Affil_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/Affil.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/Affil.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/Affil_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/Affil.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/Affil.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/Affil_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/Affil_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/Affil_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/Affil_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/citation_base.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/citation_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/citation_base.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/citation_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/citation_base.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/citation_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/citation_base.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biblio' /usr/local/bin/gmake -C medline all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh medline all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline TMPL=medline export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline TMPL=medline flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline TMPL=medline all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/DocRef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medline/DocRef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medline/DocRef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/DocRef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medline/DocRef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medline/DocRef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/DocRef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medline/DocRef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medline/DocRef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/DocRef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/DocRef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/DocRef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medline' /usr/local/bin/gmake -C pub all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh pub all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub TMPL=pub export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub TMPL=pub flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub TMPL=pub all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/Pub.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pub/Pub.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pub/Pub_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/Pub.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pub/Pub.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pub/Pub_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/Pub.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pub/Pub.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pub/Pub_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/Pub_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/Pub_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/Pub_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pub' /usr/local/bin/gmake -C seqcode all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh seqcode all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode TMPL=seqcode export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode TMPL=seqcode flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode TMPL=seqcode all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/seqcode__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/Seq_code_set.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqcode/Seq_code_set.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqcode/Seq_code_set_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/seqcode__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/Seq_code_set.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqcode/Seq_code_set.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqcode/Seq_code_set_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/seqcode__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/Seq_code_set.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqcode/Seq_code_set.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqcode/Seq_code_set_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/seqcode___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/seqcode___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/seqcode___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/seqcode__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/seqcode___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqcode' /usr/local/bin/gmake -C seq all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/Makefile.sources builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/local/bin/gmake "; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../$x ; \ (cd $d && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqblock' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqres' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh seq all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqblock/seqblock.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqres/seqres.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq TMPL=seq export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq TMPL=seq flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq TMPL=seq all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/Align_def.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq__.cpp:15: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/Linkage_evidence.cpp:97:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 97 | temp_vector.push_back(move(new_evid)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/Align_def.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/Align_def.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from seqalign__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqalign__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1919:21: warning: variable 'count' set but not used [-Wunused-but-set-variable] 1919 | size_t count = 0; | ^ In file included from seqalign__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqalign__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from seqblock__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/seqblock__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqblock/EMBL_block.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqblock/EMBL_block_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqblock__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/seqblock__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqblock/EMBL_block.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqblock/EMBL_block_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqblock__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/seqblock__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqblock/EMBL_block.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqblock/EMBL_block_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from seqfeat__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqfeat__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqfeat__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from seqloc__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqloc__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqloc__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from seqres__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/seqres__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/Byte_graph.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqres/Byte_graph.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqres/Byte_graph_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqres__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/seqres__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/Byte_graph.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqres/Byte_graph.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqres/Byte_graph_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqres__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/seqres__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/Byte_graph.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqres/Byte_graph.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqres/Byte_graph_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from seqtable__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/seqtable__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/BVector_data.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtable/BVector_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtable/BVector_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqtable__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/seqtable__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/BVector_data.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtable/BVector_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtable/BVector_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqtable__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/seqtable__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/BVector_data.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtable/BVector_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtable/BVector_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/Align_def_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/Align_def_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/Align_def_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from seqalign___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqalign___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqalign___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from seqblock___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqblock___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqblock___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from seqfeat___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqfeat___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqfeat___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from seqloc___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqloc___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqloc___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from seqres___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqres___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqres___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from seqtable___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqtable___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from seqtable___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seqport_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seqport_util.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seqport_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seqport_util.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seqport_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seqport_util.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_tree.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/misc/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_tree.cpp:1873:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1873 | m_Seq_id = move(seq_id); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_tree.cpp:2412:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 2412 | m_Seq_id = move(seq_id); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_tree.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/misc/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_tree.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/misc/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_mapper.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_loc_mapper_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_loc_mapper_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_loc_mapper_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_align_mapper_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_align_mapper_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_align_mapper_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seqlocinfo.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seqlocinfo.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seqlocinfo.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seqlocinfo.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seqlocinfo.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seqlocinfo.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/so_map.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/so_map.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/so_map.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp:93: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/SeqFeatData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de seqalign__.cpp -o seqalign__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de seqblock__.cpp -o seqblock__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de seqfeat__.cpp -o seqfeat__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de seqloc__.cpp -o seqloc__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de seqres__.cpp -o seqres__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq/test' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seq' /usr/local/bin/gmake -C seqset all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh seqset all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset TMPL=seqset export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset TMPL=seqset flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset TMPL=seqset all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/Bioseq_set.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serial.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/typeref.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/Bioseq_set.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serial.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/typeref.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/Bioseq_set.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serial.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/typeref.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/gb_release_file.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/gb_release_file.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/gb_release_file.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/gb_release_file.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/gb_release_file.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/gb_release_file.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/gb_release_file.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqset' /usr/local/bin/gmake -C submit all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh submit all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit TMPL=submit export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit TMPL=submit flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit TMPL=submit all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/Contact_info.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/submit/Contact_info.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/submit/Contact_info_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/Contact_info.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/submit/Contact_info.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/submit/Contact_info_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/Contact_info.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/submit/Contact_info.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/submit/Contact_info_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/Contact_info_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/Contact_info_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/Contact_info_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/submit' /usr/local/bin/gmake -C seqedit all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh seqedit all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit TMPL=seqedit export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit TMPL=seqedit flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit TMPL=seqedit all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/seqedit__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/seqedit__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/seqedit__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/seqedit___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/seqedit___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/seqedit___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/seqedit__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/seqedit___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqedit' /usr/local/bin/gmake -C seqsplit all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh seqsplit all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit TMPL=seqsplit export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit TMPL=seqsplit flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit TMPL=seqsplit all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/local/bin/gmake -C id1 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1 && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh id1 all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1 TMPL=id1 export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1 TMPL=id1cli export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1 TMPL=id1 flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1 TMPL=id1cli flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1 TMPL=id1 all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/Entry_complexities.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/Entry_complexities.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/Entry_complexities_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/Entry_complexities.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/Entry_complexities.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/Entry_complexities_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/Entry_complexities.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/Entry_complexities.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/Entry_complexities_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/Entry_complexities_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/Entry_complexities_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/Entry_complexities_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1 TMPL=id1cli all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/id1_client.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/id1_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/id1_client.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/id1_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/id1_client.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id1/id1_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1_client_.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id1' /usr/local/bin/gmake -C id2 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2 && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh id2 all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqsplit/seqsplit.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2 TMPL=id2 export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2 TMPL=id2cli export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2 TMPL=id2 flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2 TMPL=id2cli flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2 TMPL=id2 all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2__.cpp:26: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 132 | replies = move(ProcessSomeRequests(packet)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp:132:15: note: remove std::move call here 132 | replies = move(ProcessSomeRequests(packet)); | ^~~~~ ~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2 TMPL=id2cli all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/id2_client.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/id2_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/id2_client.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/id2_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/id2_client.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/id2/id2_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2_client_.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/id2' /usr/local/bin/gmake -C entrez2 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/demo/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2 && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh entrez2 all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2 TMPL=entrez2 export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2 TMPL=entrez2 flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2 TMPL=entrez2 all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/E2Reply.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/E2Reply.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/E2Reply_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/E2Reply.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/E2Reply.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/E2Reply_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/E2Reply.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/E2Reply.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/E2Reply_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/E2Reply_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/E2Reply_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/E2Reply_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2_client.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/entrez2_client.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/entrez2_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2_client.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/entrez2_client.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/entrez2_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2_client.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/entrez2_client.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrez2/entrez2_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -C demo all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrez2' /usr/local/bin/gmake -C pubmed all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh pubmed all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed TMPL=pubmed export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed TMPL=pubmed flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed TMPL=pubmed all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/Pubmed_entry.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pubmed/Pubmed_entry.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pubmed/Pubmed_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/Pubmed_entry.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pubmed/Pubmed_entry.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pubmed/Pubmed_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/Pubmed_entry.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pubmed/Pubmed_entry.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pubmed/Pubmed_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pubmed' /usr/local/bin/gmake -C medlars all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh medlars all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars TMPL=medlars export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars TMPL=medlars flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars TMPL=medlars all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/Medlars_entry.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medlars/Medlars_entry.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medlars/Medlars_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/Medlars_entry.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medlars/Medlars_entry.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medlars/Medlars_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/Medlars_entry.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medlars/Medlars_entry.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/medlars/Medlars_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/medlars' /usr/local/bin/gmake -C mla all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh mla all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medlars/medlars.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla TMPL=mla export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla TMPL=mlacli export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla TMPL=mla flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla TMPL=mlacli flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla TMPL=mla all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/Error_val.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/Error_val.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/Error_val_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/Error_val.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/Error_val.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/Error_val_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/Error_val.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/Error_val.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/Error_val_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/Error_val_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/Error_val_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/Error_val_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla TMPL=mlacli all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/mla_client.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/mla_client.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/mla_client.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mla/mla_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla_client_.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mla' /usr/local/bin/gmake -C proj all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh proj all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pubmed/pubmed.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj TMPL=proj export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj TMPL=proj flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj TMPL=proj all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/proj__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/Projdesc.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/proj/Projdesc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/proj/Projdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/proj__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/Projdesc.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/proj/Projdesc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/proj/Projdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/proj__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/Projdesc.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/proj/Projdesc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/proj/Projdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/proj___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/Projdesc_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/proj___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/Projdesc_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/proj___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/Projdesc_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/proj__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/proj___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/proj' /usr/local/bin/gmake -C scoremat all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh scoremat all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat TMPL=scoremat export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat TMPL=scoremat flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat TMPL=scoremat all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/BlockProperty.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/BlockProperty.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/BlockProperty_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/BlockProperty.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/BlockProperty.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/BlockProperty_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/BlockProperty.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/BlockProperty.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/BlockProperty_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/scoremat' /usr/local/bin/gmake -C blast all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh blast all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast TMPL=blast export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast TMPL=xnetblastcli export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast TMPL=blast flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast TMPL=xnetblastcli flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast TMPL=blast all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blast__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blast__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blast__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blast___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blast___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blast___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/names.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/names.hpp:42: In file included from /usr/include/c++/v1/utility:288: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/names.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/names.hpp:42: In file included from /usr/include/c++/v1/utility:288: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/names.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/names.hpp:42: In file included from /usr/include/c++/v1/utility:288: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blast__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/names.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast TMPL=xnetblastcli all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blastclient.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/blastclient.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/blastclient_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blastclient.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/blastclient.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/blastclient_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blastclient.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/blastclient.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blast/blastclient_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blastclient_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blastclient_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blastclient_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blastclient.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blastclient_.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blast' /usr/local/bin/gmake -C blastdb all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh blastdb all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb TMPL=blastdb export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb TMPL=blastdb flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb TMPL=blastdb all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/blastdb__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/blastdb__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/blastdb__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/blastdb___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/blastdb___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/blastdb___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/blastdb__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/blastdb___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastdb' /usr/local/bin/gmake -C blastxml all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh blastxml all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml TMPL=blastxml export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml TMPL=blastxml flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml TMPL=blastxml all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/blastxml__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/BlastOutput.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml/BlastOutput.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml/BlastOutput_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/blastxml__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/BlastOutput.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml/BlastOutput.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml/BlastOutput_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/blastxml__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/BlastOutput.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml/BlastOutput.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml/BlastOutput_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/blastxml___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/blastxml___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/blastxml___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/blastxml__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/blastxml___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml' /usr/local/bin/gmake -C blastxml2 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2 && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/BlastOutput2.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml2/BlastOutput2.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml2/BlastOutput2_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/BlastOutput2.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml2/BlastOutput2.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml2/BlastOutput2_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/BlastOutput2.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml2/BlastOutput2.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastxml2/BlastOutput2_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/local/bin/gmake -C mmdb all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/Makefile.sources builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/local/bin/gmake "; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb TMPL=mmdb export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb TMPL=mmdb flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb TMPL=mmdb all In file included from mmdb1__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/Atom.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb1/Atom.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb1/Atom_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb1__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/Atom.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb1/Atom.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb1/Atom_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb1__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/Atom.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb1/Atom.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb1/Atom_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from mmdb2__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb2__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb2__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb2/Alternate_conformation_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from mmdb3__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb3/Align_stats.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb3/Align_stats_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb3__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb3/Align_stats.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb3/Align_stats_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb3__.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb3/Align_stats.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mmdb3/Align_stats_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from mmdb1___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb1___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb1___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from mmdb2___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb2___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb2___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from mmdb3___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb3___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from mmdb3___.cpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb1__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb3___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de mmdb1__.cpp -o mmdb1__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de mmdb2__.cpp -o mmdb2__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de mmdb3__.cpp -o mmdb3__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de mmdb1___.cpp -o mmdb1___.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de mmdb2___.cpp -o mmdb2___.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mmdb' /usr/local/bin/gmake -C cn3d all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh cn3d all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d TMPL=cn3d export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d TMPL=cn3d flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d TMPL=cn3d all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cn3d/Cn3d_GL_matrix_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cn3d' /usr/local/bin/gmake -C cdd all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh cdd all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd TMPL=cdd export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd TMPL=cdd flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd TMPL=cdd all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/Algorithm_type.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cdd/Algorithm_type.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cdd/Algorithm_type_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/Algorithm_type.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cdd/Algorithm_type.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cdd/Algorithm_type_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/Algorithm_type.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cdd/Algorithm_type.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/cdd/Algorithm_type_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/cdd' /usr/local/bin/gmake -C ncbimime all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh ncbimime all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biblio/biblio.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/medline/medline.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb1/mmdb1.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb2/mmdb2.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mmdb3/mmdb3.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cn3d/cn3d.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime TMPL=ncbimime export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime TMPL=ncbimime flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime TMPL=ncbimime all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/Biostruc_align.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/ncbimime/Biostruc_align.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/ncbimime/Biostruc_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/Biostruc_align.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/ncbimime/Biostruc_align.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/ncbimime/Biostruc_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/Biostruc_align.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/ncbimime/Biostruc_align.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/ncbimime/Biostruc_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/local/bin/gmake -C pcsubstance all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/PC_AtomInt.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcsubstance/PC_AtomInt.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcsubstance/PC_AtomInt_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/PC_AtomInt.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcsubstance/PC_AtomInt.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcsubstance/PC_AtomInt_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/PC_AtomInt.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcsubstance/PC_AtomInt.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcsubstance/PC_AtomInt_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/local/bin/gmake -C pcassay all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh pcassay all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay TMPL=pcassay export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay TMPL=pcassay flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay TMPL=pcassay all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/pcassay__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/pcassay__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/pcassay__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay/PC_AnnotatedXRef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/pcassay__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/pcassay___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay' /usr/local/bin/gmake -C pcassay2 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2 && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh pcassay2 all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay2 MODULE_PATH=objects/pcassay2 MODULE_ASN=pcassay2.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m pcassay2.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay2 -or objects/pcassay2 -odi -od pcassay2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay2.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2 TMPL=pcassay2 all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/pcassay2/PC_AnnotatedXRef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/PC_AnnotatedXRef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/pcassay2__.cpp -o pcassay2__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.pcassay2.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/pcassay2' /usr/local/bin/gmake -C gbseq all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh gbseq all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq TMPL=gbseq export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq TMPL=gbseq flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq TMPL=gbseq all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/gbseq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/GBAltSeqData.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbseq/GBAltSeqData.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbseq/GBAltSeqData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/gbseq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/GBAltSeqData.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbseq/GBAltSeqData.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbseq/GBAltSeqData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/gbseq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/GBAltSeqData.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbseq/GBAltSeqData.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbseq/GBAltSeqData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/gbseq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/gbseq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/gbseq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/gbseq__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/gbseq___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbseq' /usr/local/bin/gmake -C insdseq all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh insdseq all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq TMPL=insdseq export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq TMPL=insdseq flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq TMPL=insdseq all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/insdseq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/INSDAltSeqData.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/insdseq/INSDAltSeqData.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/insdseq/INSDAltSeqData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/insdseq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/INSDAltSeqData.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/insdseq/INSDAltSeqData.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/insdseq/INSDAltSeqData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/insdseq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/INSDAltSeqData.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/insdseq/INSDAltSeqData.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/insdseq/INSDAltSeqData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/insdseq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/insdseq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/insdseq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/insdseq__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/insdseq___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/insdseq' /usr/local/bin/gmake -C tinyseq all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh tinyseq all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq TMPL=tinyseq export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq TMPL=tinyseq flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq TMPL=tinyseq all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/TSeq.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/tinyseq/TSeq.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/tinyseq/TSeq_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/TSeq.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/tinyseq/TSeq.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/tinyseq/TSeq_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/TSeq.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/tinyseq/TSeq.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/tinyseq/TSeq_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/TSeq_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/TSeq_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/TSeq_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/local/bin/gmake -C biotree all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh biotree all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree TMPL=biotree export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree TMPL=biotree flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree TMPL=biotree all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/biotree__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/BioTreeContainer.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biotree/BioTreeContainer.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biotree/BioTreeContainer_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/biotree__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/BioTreeContainer.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biotree/BioTreeContainer.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biotree/BioTreeContainer_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/biotree__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/BioTreeContainer.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biotree/BioTreeContainer.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biotree/BioTreeContainer_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/biotree___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/biotree___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/biotree___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/biotree__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/biotree___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/biotree' /usr/local/bin/gmake -C entrezgene all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test/Makefile cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh entrezgene all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene TMPL=entrezgene export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene TMPL=entrezgene flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene TMPL=entrezgene all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrezgene/Entrezgene.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrezgene/Entrezgene_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:22: warning: loop variable 'root_comment' creates a copy from type 'const value_type' (aka 'const ncbi::CRef') [-Wrange-loop-construct] 216 | for ( const auto root_comment : GetComments() ) { | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:216:11: note: use reference type 'const value_type &' (aka 'const ncbi::CRef &') to prevent copying 216 | for ( const auto root_comment : GetComments() ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ | & In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrezgene/Entrezgene.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrezgene/Entrezgene_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrezgene/Entrezgene.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/entrezgene/Entrezgene_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene/unit_test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/local/bin/gmake -C omssa all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh omssa all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa TMPL=omssa export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa TMPL=omssa flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa TMPL=omssa all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/omssa__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/MSBioseq.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/omssa/MSBioseq.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/omssa/MSBioseq_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/omssa__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/MSBioseq.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/omssa/MSBioseq.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/omssa/MSBioseq_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/omssa__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/MSBioseq.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/omssa/MSBioseq.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/omssa/MSBioseq_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/omssa___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/MSBioseq_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/omssa___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/MSBioseq_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/omssa___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/MSBioseq_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/omssa__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/omssa___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/omssa' /usr/local/bin/gmake -C remap all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh remap all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap TMPL=remap export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap TMPL=remapcli export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap TMPL=remap flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap TMPL=remapcli flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap TMPL=remap all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/RMReply.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/RMReply.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/RMReply_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/RMReply.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/RMReply.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/RMReply_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/RMReply.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/RMReply.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/RMReply_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/RMReply_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/RMReply_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/RMReply_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap TMPL=remapcli all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/remap_client.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/remap_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/remap_client.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/remap_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap_client.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/remap_client.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/remap/remap_client_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap_client_.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/remap' /usr/local/bin/gmake -C seqtest all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh seqtest all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest TMPL=seqtest export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest TMPL=seqtest flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest TMPL=seqtest all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/seqtest__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/SeqTestResults.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtest/SeqTestResults.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtest/SeqTestResults_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/seqtest__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/SeqTestResults.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtest/SeqTestResults.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtest/SeqTestResults_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/seqtest__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/SeqTestResults.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtest/SeqTestResults.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqtest/SeqTestResults_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/seqtest___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/seqtest___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/seqtest___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/seqtest__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/seqtest___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/seqtest' /usr/local/bin/gmake -C taxon1 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1 && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh taxon1 all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1 TMPL=taxon1 export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1 TMPL=local_taxon export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1 TMPL=taxon1 flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1 TMPL=local_taxon flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1 TMPL=taxon1 all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/Taxon1_data.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/Taxon1_data.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/Taxon1_data.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/cache.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serial.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/typeref.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/cache.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serial.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/typeref.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/cache.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serial.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/impl/typeref.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialdef.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/utils.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/utils.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/utils.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/ctreecont.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/ctreecont.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/ctreecont.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/ctreecont.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1 TMPL=local_taxon all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/local_taxon.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/local_taxon.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/local_taxon.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/local_taxon.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/local_taxon.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/local_taxon.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/local_taxon.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon1' /usr/local/bin/gmake -C taxon3 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3 && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh taxon3 all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3 TMPL=taxon3 export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3 TMPL=taxon3 flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3 TMPL=taxon3 all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/taxon3' /usr/local/bin/gmake -C gbproj all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh gbproj all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqset/seqset.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/submit/submit.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj TMPL=gbproj export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj TMPL=gbproj flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj TMPL=gbproj all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj__.cpp:10: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] 310 | CProjectItem& item = **it; | ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/gbproj' /usr/local/bin/gmake -C trackmgr all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh trackmgr all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr TMPL=trackmgr export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr TMPL=trackmgr flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr TMPL=trackmgr all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/tms_exception.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/blast_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/blast_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/blast_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/blast_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/blast_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:39: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 83 | : TBaseClient(move(c)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:84:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 84 | m_Http_svc(move(c.m_Http_svc)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:85:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 85 | m_Http_session(move(c.m_Http_session)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:86:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 86 | m_Rpc_client(move(c.m_Rpc_client)) | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:454:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 454 | : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:83:11: note: in instantiation of member function 'ncbi::CGridRPCBaseClient<>::CGridRPCBaseClient' requested here 83 | : TBaseClient(move(c)), | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp:38: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:454:48: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 454 | : m_NS_api(move(c.m_NS_api)), m_NC_api(move(c.m_NC_api)), | ^ | std:: 17 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/createusertrack_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/createremotetrack_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/removeusertrack_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/item_resolver_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/switch_context_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/track_attrvalue_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackset_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackset_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/createtrackset_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/supported_assemblies_client.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker_app.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/grid_worker.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netschedule_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/netservice_api.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/services/srv_connections.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/trackmgr__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/trackmgr/TMgr_ACL_AccessLevel_.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/tms_exception.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/local/bin/gmake -C valerr all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh valerr all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr TMPL=valerr export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr TMPL=valerr flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr TMPL=valerr all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/ValidErrItem.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/valerr/ValidErrItem.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr__.cpp:3: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/ValidError.cpp:161:5: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result] 161 | unique(m_SuppressionList.begin(), m_SuppressionList.end()); | ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/ValidErrItem.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/valerr/ValidErrItem.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/ValidErrItem.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/valerr/ValidErrItem.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valerr' /usr/local/bin/gmake -C valid all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh valid all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid TMPL=valid export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid TMPL=valid flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid TMPL=valid all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/valid__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/Comment_rule.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/valid__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/Comment_rule.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/valid__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/Comment_rule.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/static_set.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/valid___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/Comment_rule_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/valid___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/Comment_rule_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/valid___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/Comment_rule_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/valid__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/valid___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/valid' /usr/local/bin/gmake -C access all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh access all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access TMPL=access export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access TMPL=access flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access TMPL=access all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/access__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/Link_set.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/access/Link_set.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/access/Link_set_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/access__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/Link_set.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/access/Link_set.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/access/Link_set_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/access__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/Link_set.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/access/Link_set.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/access/Link_set_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/access___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/Link_set_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/access___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/Link_set_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/access___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/Link_set_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/access__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/access___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/access__.cpp -o access__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/access' /usr/local/bin/gmake -C docsum all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh docsum all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum TMPL=docsum export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum TMPL=docsum flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum TMPL=docsum all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/docsum__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/Assay.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/docsum/Assay.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/docsum/Assay_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/docsum__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/Assay.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/docsum/Assay.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/docsum/Assay_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/docsum__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/Assay.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/docsum/Assay.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/docsum/Assay_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/docsum___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/Assay_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/docsum___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/Assay_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/docsum___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/Assay_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/docsum__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/docsum___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/docsum' /usr/local/bin/gmake -C featdef all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh featdef all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef TMPL=featdef export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef TMPL=featdef flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef TMPL=featdef all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/featdef__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/FeatDef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/featdef/FeatDef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/featdef/FeatDef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/featdef__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/FeatDef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/featdef/FeatDef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/featdef/FeatDef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/featdef__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/FeatDef.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/featdef/FeatDef.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/featdef/FeatDef_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/featdef___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/FeatDef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/featdef___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/FeatDef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/featdef___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/FeatDef_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/featdef__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/featdef___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/featdef' /usr/local/bin/gmake -C genomecoll all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh genome_collection all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/make_asn.lock. Clearing stale lock /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/make_asn.lock from PID 27408 for PID 55645 (make_asn) Acquired /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/make_asn.lock for PID 55645 (make_asn) /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll TMPL=genome_collection export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll TMPL=genome_collection flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll TMPL=genome_collection all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll TMPL=gencoll_client all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GCClientRequest.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GCClientRequest.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GCClientRequest_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GCClientRequest.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GCClientRequest.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GCClientRequest_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GCClientRequest.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GCClientRequest.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GCClientRequest_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GCClientRequest_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GCClientRequest_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/GCClientRequest_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:97:5: warning: 'SetRetryLimit' is deprecated [-Wdeprecated-declarations] 97 | SetRetryLimit(40); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/rpcbase_impl.hpp:91:5: note: 'SetRetryLimit' has been explicitly marked deprecated here 91 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/genomic_collections_cli_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:28: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/cached_assembly.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GC_Assembly.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: warning: adding 'size_type' (aka 'unsigned long') to a string does not append to the string [-Wstring-plus-int] 86 | NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' 708 | message)); \ | ^~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' 697 | exception_class, err_code, message) | ^~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' 685 | NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) | ^~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' 681 | prev_exception_ptr, exception_class::err_code, (message)) | ^~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' 689 | throw (exception_var) | ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:86:74: note: use array indexing to silence this warning 86 | NCBI_THROW(CCoreException, eCore, "Invalid blob size detected: " + blob.size()); | ^ | & [ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:708:45: note: expanded from macro 'NCBI_THROW' 708 | message)); \ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:697:51: note: expanded from macro 'NCBI_EXCEPTION' 697 | exception_class, err_code, message) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:685:63: note: expanded from macro 'NCBI_EXCEPTION_VAR' 685 | NCBI_EXCEPTION_VAR_EX(name, 0, exception_class, err_code, message) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:681:57: note: expanded from macro 'NCBI_EXCEPTION_VAR_EX' 681 | prev_exception_ptr, exception_class::err_code, (message)) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:689:12: note: expanded from macro 'NCBI_EXCEPTION_THROW' 689 | throw (exception_var) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:28: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/cached_assembly.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GC_Assembly.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp:28: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/cached_assembly.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genomecoll/GC_Assembly.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -C gc_cli all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=gc_cli -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O gc_cli.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lsqlitewrapp-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o gc_cli strip gc_cli /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/gc_cli gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/local/bin/gmake -C homologene all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh homologene all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqalign/seqalign.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene TMPL=homologene export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene TMPL=homologene flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene TMPL=homologene all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/homologene__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/HG_Alignment.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/homologene/HG_Alignment.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/homologene/HG_Alignment_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/homologene__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/HG_Alignment.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/homologene/HG_Alignment.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/homologene/HG_Alignment_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/homologene__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/HG_Alignment.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/homologene/HG_Alignment.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/homologene/HG_Alignment_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/homologene___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/homologene___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/homologene___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/homologene__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/homologene___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/homologene' /usr/local/bin/gmake -C mim all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh mim all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim TMPL=mim export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim TMPL=mim flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim TMPL=mim all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/mim__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/Mim_allelic_variant.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mim/Mim_allelic_variant.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mim/Mim_allelic_variant_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/mim__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/Mim_allelic_variant.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mim/Mim_allelic_variant.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mim/Mim_allelic_variant_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/mim__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/Mim_allelic_variant.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mim/Mim_allelic_variant.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/mim/Mim_allelic_variant_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/mim___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/mim___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/mim___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/mim__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/mim___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/mim' /usr/local/bin/gmake -C objprt all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh objprt all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt TMPL=objprt export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt TMPL=objprt flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt TMPL=objprt all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/objprt__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/PrintForm.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/objprt/PrintForm.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/objprt/PrintForm_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/objprt__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/PrintForm.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/objprt/PrintForm.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/objprt/PrintForm_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/objprt__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/PrintForm.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/objprt/PrintForm.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/objprt/PrintForm_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/objprt___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/PrintForm_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/objprt___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/PrintForm_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/objprt___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/PrintForm_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/objprt__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/objprt___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/objprt' /usr/local/bin/gmake -C variation all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh variation all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqfeat/seqfeat.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seqloc/seqloc.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/pub/pub.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation TMPL=variation export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation TMPL=variation flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation TMPL=variation all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/variation__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/VariantPlacement.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation/VariantPlacement.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation/VariantPlacement_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/variation__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/VariantPlacement.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation/VariantPlacement.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation/VariantPlacement_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/variation__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/VariantPlacement.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation/VariantPlacement.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation/VariantPlacement_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/variation___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/variation___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/variation___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/variation__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/variation___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -C macro all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh macro all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro TMPL=macro export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro TMPL=macro flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro TMPL=macro all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/macro__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/macro__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/macro__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/macro___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/macro___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/macro___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/macro__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/macro___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -C genesbyloc all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/GBL_Data.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genesbyloc/GBL_Data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genesbyloc/GBL_Data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/GBL_Data.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genesbyloc/GBL_Data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genesbyloc/GBL_Data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/GBL_Data.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genesbyloc/GBL_Data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/genesbyloc/GBL_Data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/GBL_Data_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/GBL_Data_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/GBL_Data_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/local/bin/gmake -C coords all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh objcoords all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords TMPL=objcoords export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords TMPL=objcoords flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords TMPL=objcoords all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/objcoords__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/HGVS_Coordinate.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/coords/HGVS_Coordinate.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/coords/HGVS_Coordinate_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/objcoords__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/HGVS_Coordinate.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/coords/HGVS_Coordinate.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/coords/HGVS_Coordinate_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/objcoords__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/HGVS_Coordinate.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/coords/HGVS_Coordinate.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/coords/HGVS_Coordinate_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/objcoords___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/HGVS_Coordinate_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/objcoords___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/HGVS_Coordinate_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/objcoords___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/HGVS_Coordinate_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/objcoords__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/objcoords___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/coords' /usr/local/bin/gmake -C varrep all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh varrep all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.23.2 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep TMPL=varrep export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep TMPL=varrep flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep TMPL=varrep all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/varrep__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/AaInterval.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/varrep/AaSite.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/varrep/AaSite_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/varrep__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/AaInterval.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/varrep/AaSite.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/varrep/AaSite_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/varrep__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/AaInterval.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/varrep/AaSite.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/varrep/AaSite_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/varrep___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/AaInterval_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/varrep___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/AaInterval_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/varrep___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/AaInterval_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/varrep__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/varrep___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/varrep' /usr/local/bin/gmake -C variation_libs all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs' /usr/local/bin/gmake -C dbsnp all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' /usr/local/bin/gmake -C search_by_rsid all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/trackmgr/trackmgr.asn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid export-headers gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/search_by_rsid/Error_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/local/bin/gmake -C tooltip_service all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.23.2 gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service export-headers gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/variation_libs' /usr/local/bin/gmake -C dbsnp all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp' /usr/local/bin/gmake -C primary_track all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test/Makefile cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --protobuf dbsnp all File dbsnp.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src && /usr/local/bin/protoc -I.:/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src --cpp_out=. objects/dbsnp/primary_track/dbsnp.proto /bin/mkdir -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/dbsnp/primary_track /bin/mv -f dbsnp.pb.h /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/dbsnp/primary_track/dbsnp.pb.h cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src && /usr/local/bin/protoc -I.:/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src \ --grpc_out=generate_mock_code=true:. \ --plugin=protoc-gen-grpc=/usr/local/bin/grpc_cpp_plugin objects/dbsnp/primary_track/dbsnp.proto /bin/mkdir -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/dbsnp/primary_track /bin/mv -f dbsnp.grpc.pb.h /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/dbsnp/primary_track/dbsnp.grpc.pb.h /bin/mv -f dbsnp_mock.grpc.pb.h /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/dbsnp/primary_track/dbsnp_mock.grpc.pb.h /bin/rm -f dbsnp.pb.cpp dbsnp.grpc.pb.cpp gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/dbsnp/primary_track/snpptis.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/dbsnp/primary_track/snpptis.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/dbsnp/primary_track/snpptis.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_ptis.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.dbsnp_ptis.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' /usr/local/bin/gmake -C test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp/primary_track' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects/dbsnp' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objects' /usr/local/bin/gmake -C objmgr all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/test/Makefile gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr TMPL=objmgr export-headers gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr TMPL=objmgr flag-stamps gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr TMPL=objmgr all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_setters.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/objmgr_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_setters.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/objmgr_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_setters.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/objmgr_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_info.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_info.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_info.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/table_field.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/table_field.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/table_field.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map_switch.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map_switch.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map_switch.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map_switch.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map_switch.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map_switch.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/snp_annot_info.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/snp_annot_info.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/snp_annot_info.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_selector.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_selector.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_name.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_selector.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_selector.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_name.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_selector.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_selector.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_name.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_descr_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_descr_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_descr_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/feat_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/feat_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/feat_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/feat_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/feat_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/feat_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/graph_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/graph_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/graph_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/graph_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/graph_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/graph_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_object.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_object.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_object.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_object_index.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_object_index.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_object_index.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_object_index.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_object_index.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_object_index.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_info_object.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_info_object.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_info_object.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_base_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_base_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_base_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:996:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 996 | tse_set2 = move(m_Loader->GetRecords(idh, choice)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:996:24: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:996:24: note: remove std::move call here 996 | tse_set2 = move(m_Loader->GetRecords(idh, choice)); | ^~~~~ ~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:1094:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1094 | tse_set = move(m_Loader->GetOrphanAnnotRecordsNA(ids, sel, processed_nas)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:1094:23: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:1094:23: note: remove std::move call here 1094 | tse_set = move(m_Loader->GetOrphanAnnotRecordsNA(ids, sel, processed_nas)); | ^~~~~ ~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:1152:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1152 | tse_set2 = move(m_Loader->GetExternalAnnotRecordsNA(bioseq, sel, processed_nas)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:1152:24: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:1152:24: note: remove std::move call here 1152 | tse_set2 = move(m_Loader->GetExternalAnnotRecordsNA(bioseq, sel, processed_nas)); | ^~~~~ ~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_source.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/data_source.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 9 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/priority.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/priority.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/priority.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/priority.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/priority.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/priority.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_manager.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/objmgr_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_manager.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/objmgr_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_manager.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/objmgr_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/prefetch_manager_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/prefetch_manager_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/prefetch_manager_impl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/prefetch_actions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/prefetch_manager.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/prefetch_actions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/prefetch_manager.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/prefetch_actions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/prefetch_manager.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/heap_scope.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/heap_scope.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/heap_scope.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/heap_scope.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/heap_scope.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/heap_scope.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_impl.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_impl.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_impl.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/scope_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/scope_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/scope_info.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/tse_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/tse_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/tse_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map_ci.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map_ci.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map_ci.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map_ci.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map_ci.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map_ci.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_map.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_entry_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_entry_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_entry_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_annot_ci.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_annot_ci.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_annot_ci.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_table_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_table_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_table_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/annot_types_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/align_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/align_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/align_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/align_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/align_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/align_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_loader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/data_loader.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_loader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/data_loader.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_loader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/data_loader.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/handle_range.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/handle_range.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/handle_range.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/objmgr_exception.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/objmgr_exception.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/objmgr_exception.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/handle_range_map.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/handle_range_map.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/handle_range_map.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/handle_range_map.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/handle_range_map.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/handle_range_map.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/handle_range.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/object_manager.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/object_manager.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/object_manager.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_vector.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_vector.cpp:835:13: warning: variable 'dst_pos' set but not used [-Wunused-but-set-variable] 835 | TSeqPos dst_pos = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_vector.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_vector.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_descr.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_split_info.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_split_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_split_info.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_split_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_split_info.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_split_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_chunk_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_chunk_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_chunk_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_chunk_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_chunk_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_chunk_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_ci.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_ci.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_ci.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_type_index.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_type_index.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_type_index.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_collector.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_collector.cpp:3694:17: warning: variable 'index' set but not used [-Wunused-but-set-variable] 3694 | TSeqPos index = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_collector.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_collector.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_loader_factory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/data_loader_factory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_loader_factory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/data_loader_factory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_loader_factory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/data_loader_factory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/mapped_feat.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/mapped_feat.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/mapped_feat.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/mapped_feat.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/mapped_feat.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/mapped_feat.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_align_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_align_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_align_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_assigner.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_assigner.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_assigner.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_transaction.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_transaction.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_transaction.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/scope_impl.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/scope_impl.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/scope_impl.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edit_saver.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/edit_saver.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edit_saver.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/edit_saver.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edit_saver.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/edit_saver.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/unsupp_editsaver.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/unsupp_editsaver.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/unsupp_editsaver.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edits_db_engine.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/edits_db_engine.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edits_db_engine.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/edits_db_engine.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edits_db_engine.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/edits_db_engine.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edits_db_saver.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edits_db_saver.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edits_db_saver.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_finder.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_finder.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_finder.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_finder.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_finder.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/annot_finder.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/gc_assembly_parser.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/gc_assembly_parser.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/gc_assembly_parser.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/gc_assembly_parser.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/gc_assembly_parser.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/gc_assembly_parser.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split_parser.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/split_parser.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split_parser.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/split_parser.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split_parser.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/split_parser.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_id_sort.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_id_sort.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_id_sort.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_id_sort.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_id_sort.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/impl/seq_id_sort.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_setters.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for 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/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for 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/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_id_sort.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/table_field.cpp -o table_field.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc 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-o split_parser.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -C test all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/test' /usr/local/bin/gmake -C util all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util TMPL=util export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util TMPL=util flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util TMPL=util all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/weight.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/weight.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/weight.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/sequence.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/sequence.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/sequence.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/feature.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objistr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/feature.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objistr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/feature.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objistr.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/indexer.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/unicode.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/indexer.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/unicode.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/indexer.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/unicode.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seqtitle.cpp:308:56: warning: variable 'prots' set but not used [-Wunused-but-set-variable] 308 | unsigned int genes = 0, cdregions = 0, prots = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/create_defline.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/create_defline.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/strsearch.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/create_defline.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/create_defline.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/strsearch.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/create_defline.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/create_defline.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/strsearch.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/obj_sniff.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/obj_sniff.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/obj_sniff.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/obj_sniff.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/obj_sniff.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/obj_sniff.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/objutil.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/objutil.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/objutil.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: unused function 's_IsValidAccession' [-Wunused-function] 1114 | static bool s_IsValidAccession(const string& acc) | ^~~~~~~~~~~~~~~~~~ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/feature_edit.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/feature_edit.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/feature_edit.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:308:14: warning: variable 'used_gene' set but not used [-Wunused-but-set-variable] 308 | bool used_gene = false; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] 1033 | bool added = false, rval = false; | ^~~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:222:58: warning: unused variable 'mod_it_other' [-Wunused-variable] 222 | CAutoDefSourceDescription::TModifierVector::iterator mod_it_other; | ^~~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:34: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:34: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:34: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/autodef_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/weight.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_options.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/weight.cpp -o weight.o 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-Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/util' /usr/local/bin/gmake -C split all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split TMPL=id2_split export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split TMPL=id2_split flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split TMPL=id2_split all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_params.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_params.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_params.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/split_blob.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/split_blob.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/split_blob.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/split_blob.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/split_blob.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/split_blob.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/id_range.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/id_range.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/id_range.cpp:334:12: warning: variable 'row' set but not used [-Wunused-but-set-variable] 334 | size_t row = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/id_range.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/id_range.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/id_range.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/id_range.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/object_splitinfo.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/object_splitinfo.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/object_splitinfo.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/object_splitinfo.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/object_splitinfo.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/object_splitinfo.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/asn_sizer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/asn_sizer.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/asn_sizer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/asn_sizer.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/asn_sizer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/asn_sizer.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/annot_piece.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/annot_piece.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/annot_piece.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/annot_piece.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/annot_piece.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/annot_piece.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/chunk_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/chunk_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/chunk_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/chunk_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/chunk_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/chunk_info.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/size.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/size.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/size.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/size.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/size.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/split/size.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/split_exceptions.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/size.cpp -o size.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objmgr' /usr/local/bin/gmake -C objtools all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/unit_test_util/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/unit_test_util/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test_util/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/lds2/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/lds2/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT lds2/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cddalignview/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cddalignview/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT cddalignview/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/manip/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/manip/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT manip/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/manip/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/huge_asn/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/huge_asn/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/huge_asn/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT huge_asn/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/huge_asn/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/validator/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/validator/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT validator/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/validator/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/asniotest/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/asniotest/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT asniotest/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT align/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/snputil/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/snputil/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT snputil/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/snputil/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/uudutil/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/uudutil/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/uudutil/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/variation/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/variation/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT variation/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/variation/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/writers/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/writers/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT writers/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/writers/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/import/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/import/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/import/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT import/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/import/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/flatfile/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/flatfile/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/flatfile/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT flatfile/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/flatfile/Makefile /usr/local/bin/gmake -C logging all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging TMPL=logging export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging TMPL=logging flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging TMPL=logging all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging/message.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging/message.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging/message.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging/listener.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging/listener.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging/listener.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging/message.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging/listener.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging/message.cpp -o message.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/logging' /usr/local/bin/gmake -C unit_test_util all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/unit_test_util' /usr/local/bin/gmake -C readers all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/app/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/app/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT app/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers TMPL=xobjread export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers TMPL=xobjreadex export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers TMPL=xobjread flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers TMPL=xobjreadex flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers TMPL=xobjread all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_message.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/reader_message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_message.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/reader_message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_message.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/reader_message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_listener.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/reader_listener.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/reader_message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_listener.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/reader_listener.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/reader_message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_listener.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/reader_listener.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/reader_message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_message_handler.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/line_error.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_message_handler.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/line_error.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_message_handler.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/line_error.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/read_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/read_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/read_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/seqid_validate.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/seqid_validate.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/seqid_validate.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/acc_pattern.cpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_util.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/acc_pattern.cpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_util.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/acc_pattern.cpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_util.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_read.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_read.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_read.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_read.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_read.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_read.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_util.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_util.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_util.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_util.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_util.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_util.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_util.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_util.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_util.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_validate_reader.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_validate_reader.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/agp_validate_reader.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/cigar.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/cigar.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/cigar.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/cigar.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/cigar.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/cigar.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/fasta.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/fasta.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/fasta.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_formats.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_formats.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_formats.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/alnread.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/alnread.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/alnread.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_errors.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_errors.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_errors.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/aln_error_reporter.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/aln_error_reporter.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/aln_error_reporter.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/aln_reader.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/aln_reader.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/aln_reader.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_aln_builder.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_aln_builder.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_aln_builder.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/getfeature.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/range.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/getfeature.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/range.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/getfeature.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/range.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/track_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/track_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/track_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/microarray_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/line_reader.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/microarray_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/line_reader.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/microarray_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/line_reader.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/phrap.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/range.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/phrap.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/range.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/phrap.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/range.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_base.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/readfeat.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/readfeat.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/readfeat.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/rm_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/rm_reader.cpp:783:12: warning: variable 'record_counter' set but not used [-Wunused-but-set-variable] 783 | size_t record_counter = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/rm_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/rm_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/wiggle_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/wiggle_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/wiggle_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff3_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff3_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff3_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gtf_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gtf_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gtf_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff_base_columns.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff_base_columns.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff_base_columns.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff2_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff2_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff2_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff2_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff2_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff2_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gvf_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gvf_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gvf_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/vcf_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/vcf_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/vcf_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/psl_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/psl_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/psl_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/psl_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/psl_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/psl_data.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/psl_data.cpp:40: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/psl_data.hpp:88:28: warning: private field 'mpEL' is not used [-Wunused-private-field] 88 | CReaderMessageHandler* mpEL; | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_column_data.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_column_data.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_column_data.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/best_feat_finder.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/best_feat_finder.hpp:36: In file included from /usr/include/c++/v1/map:589: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/best_feat_finder.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/best_feat_finder.hpp:36: In file included from /usr/include/c++/v1/map:589: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/best_feat_finder.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/best_feat_finder.hpp:36: In file included from /usr/include/c++/v1/map:589: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:36: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:36: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:36: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_exception.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_exception.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_exception.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_converter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_converter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_converter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_error.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/mod_error.hpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_error.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/mod_error.hpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_error.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/mod_error.hpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:185:10: warning: private field 'm_HasSetTaxid' is not used [-Wunused-private-field] 185 | bool m_HasSetTaxid = false; | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_inst.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/message_listener.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/message_listener.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/message_listener.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/message_listener.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/message_listener.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/message_listener.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/line_error.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/line_error.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/line_error.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/line_error.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/line_error.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/line_error.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_message.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/read_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff3_location_merger.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gtf_location_merger.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql_standard.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_autosql_custom.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/bed_column_data.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/line_error.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc 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-Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjread.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxobjread.a /bin/ln -f .xobjread.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xobjread.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers TMPL=xobjreadex all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_config.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_config.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_config.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_database.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_database.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_database.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/source_mod_parser_wrapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/tempstr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/source_mod_parser_wrapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/tempstr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/source_mod_parser_wrapper.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/tempstr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/glimmer_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjreadex.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xobjreadex.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -C app all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers/app' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers/app' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers/test' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers/unit_test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/readers' /usr/local/bin/gmake -C blast all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT gene_info_writer/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer/Makefile /usr/local/bin/gmake -C seqdb_reader all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/metareg.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:2459:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 2459 | int count; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/metareg.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/metareg.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbireg.hpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2998:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] 2998 | TIndx map_end = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] 972 | int found_short(-1); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/error_codes.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbblob.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbblob.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbblob.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/lmdbxx/lmdb++.h:43: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/lmdbxx/lmdb++.h:43: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/lmdbxx/lmdb++.h:43: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp:173:17: warning: private field 'm_FileType' is not used [-Wunused-private-field] 173 | ELMDBFileType m_FileType; | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/tax4blastsqlite.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/tax4blastsqlite.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/tax4blastsqlite.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/tax4blastsqlite.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall 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-DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE 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/usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE 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-DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include 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/usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/tax4blastsqlite.cpp -o tax4blastsqlite.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o tax4blastsqlite.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -C demo all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo flag-stamps gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=tax4blast flag-stamps gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:316:15: warning: private field 'm_MaxLength' is not used [-Wunused-private-field] 316 | const int m_MaxLength; | ^ 4 warnings generated. gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O seqdb_demo.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lsqlite3 -llmdb -pthread -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o seqdb_demo strip seqdb_demo /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/seqdb_demo gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=tax4blast all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/tax4blast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/tax4blast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/tax4blast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/tax4blast.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=tax4blast -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/demo/tax4blast.cpp -o tax4blast.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O tax4blast.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lseqdb-static -lsqlitewrapp-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lsqlite3 -llmdb -pthread -lsqlite3 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o tax4blast strip tax4blast /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tax4blast /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f tax4blast /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/tax4blast gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/local/bin/gmake -C test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:9: warning: 'GetMemoryUsage' is deprecated [-Wdeprecated-declarations] 114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:510:1: note: 'GetMemoryUsage' has been explicitly marked deprecated here 510 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O seqdb_perf.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lsqlite3 -llmdb -pthread -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o seqdb_perf strip seqdb_perf /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/local/bin/gmake -C seqdb_writer all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:1359:9: warning: variable 'offset_pairs_count' set but not used [-Wunused-but-set-variable] 1359 | int offset_pairs_count = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/tempstr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:304:9: warning: variable 'index' set but not used [-Wunused-but-set-variable] 304 | int index = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/tempstr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/tempstr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Align_def_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_filter_program.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_filter_program_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_filter_program.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_filter_program_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_filter_program.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/blastdb/Blast_filter_program_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/typeinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/typeinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/typeinfo.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:57: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:57: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:57: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:30: warning: 'GetCpuCount' is deprecated [-Wdeprecated-declarations] 295 | unsigned int num_threads = GetCpuCount(); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:478:8: note: 'GetCpuCount' has been explicitly marked deprecated here 478 | inline NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include 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/usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/local/bin/gmake -C gene_info_reader all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/env_reg.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/env_reg.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/env_reg.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbienv.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -C demo all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O gene_info_reader_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lsqlite3 -llmdb -pthread -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o gene_info_reader strip gene_info_reader /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/local/bin/gmake -C gene_info_writer all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /usr/local/bin/gmake -C services all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/services TMPL=blast_services export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/services TMPL=blast_services flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/services TMPL=blast_services all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/services/blast_services.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/services/blast_services.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/services/blast_services.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/services/blast_services.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/local/bin/gmake -C blastdb_format all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/blast' /usr/local/bin/gmake -C lds2 all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/lds2' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/lds2' /usr/local/bin/gmake -C pubseq_gateway all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT cassandra/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT protobuf/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT cache/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/ipg/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT ipg/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg/Makefile /usr/local/bin/gmake -C cassandra all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cassandra' /usr/local/bin/gmake -C client all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:32: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:136:53: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 136 | void SetFlags(TOptionalFlags flags) { m_Flags = move(flags); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:143:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 143 | void SetUserArgs(SPSG_UserArgs user_args) { m_UserArgs = move(user_args); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:151:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 151 | m_RequestContext(GetCtx(move(request_context))) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:181:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 181 | CPSG_BioId(string id, TType type = {}) : m_Id(move(id)), m_Type(type) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:233:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 233 | : m_Id(move(id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:234:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 234 | m_LastModified(move(last_modified)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:242:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 242 | m_LastModified(move(last_modified)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:268:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 268 | m_Id2Info(move(id2_info)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:319:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 319 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:319:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 319 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:320:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 320 | m_BioId(move(bio_id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:97: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:362:71: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 362 | void ExcludeTSE(CPSG_BlobId blob_id) { m_ExcludeTSEs.emplace_back(move(blob_id)); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:370:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 370 | void SetResendTimeout(CTimeout resend_timeout) { m_ResendTimeout = move(resend_timeout); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:401:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 401 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:401:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 401 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:402:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 402 | m_BioId(move(bio_id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:97: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:463:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 463 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:463:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 463 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:464:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 464 | m_BlobId(move(blob_id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:507:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:507:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:508:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 508 | m_BioIds(move(bio_ids)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:509:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 509 | m_AnnotNames(move(annot_names)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:104: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:124: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:574:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 574 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:574:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 574 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:575:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 575 | m_ChunkId(move(chunk_id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:1334:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1334 | m_RequestContext = GetCtx(move(request_context)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:44: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:38: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:253:12: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 253 | id(move(i)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:388:38: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 388 | m_Messages.emplace_front(move(message)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:424:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 424 | debug_printout(move(id), params), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:425:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 425 | queue(move(q)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:426:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 426 | stats(move(s)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:564:98: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 564 | SPSG_TimedRequest(shared_ptr r) : m_Id(SPSG_Processor::GetNextId()), m_Request(move(r)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:605:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 605 | auto timed_req = move(queue.front()); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:608:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 608 | return tuple_cat(make_tuple(make_optional(move(timed_req))), move(p)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:608:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 608 | return tuple_cat(make_tuple(make_optional(move(timed_req))), move(p)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:724:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 724 | address(move(a)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:728:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 728 | throttling(address, move(p), l) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:1104:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1104 | m_Service(move(service)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:1105:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1105 | m_Stats(move(stats)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:1107:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1107 | m_QueuesRef(move(queues_ref)) | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:101:65: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 101 | void SetQueueArgs(SPSG_UserArgs queue_args) { m_QueueArgs = move(queue_args); x_UpdateCache(); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:128:91: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 128 | void SetUserArgs(SPSG_UserArgs user_args) { m_UserArgsBuilder.GetLock()->SetQueueArgs(move(user_args)); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:296:46: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 296 | return make_unique(blob_id, move(last_modified)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:380:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 380 | return new CPSG_SkippedBlob(move(id), reason, move(sent_seconds_ago), move(time_until_resend)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:380:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 380 | return new CPSG_SkippedBlob(move(id), reason, move(sent_seconds_ago), move(time_until_resend)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:380:75: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 380 | return new CPSG_SkippedBlob(move(id), reason, move(sent_seconds_ago), move(time_until_resend)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:883:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 883 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:883:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 883 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:884:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 884 | m_Protein(move(protein)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:886:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 886 | m_Nucleotide(move(nucleotide)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:933:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 933 | auto reply = make_shared(move(request_id), params, queue, stats); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:940:46: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 940 | auto request = make_shared(move(abs_path_ref), request_flags, reply, request_context->Clone(), params); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:945:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 945 | user_reply->m_Impl->reply = move(reply); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:947:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 947 | user_reply->m_Request = move(user_request); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:958:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 958 | if (auto user_reply = SendRequestAndGetReply(move(request), move(deadline))) { | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:958:65: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 958 | if (auto user_reply = SendRequestAndGetReply(move(request), move(deadline))) { | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:959:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 959 | queue->Push(move(user_reply)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:970:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 970 | if (queue->WaitUntil(queue->Stopped(), move(deadline), false, true)) { | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1018:10: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1018 | m_Id(move(id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1025:10: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1025 | m_Id(move(id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1122:10: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1122 | m_Id(move(id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1124:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1124 | m_SentSecondsAgo(move(sent_seconds_ago)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1125:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1125 | m_TimeUntilResend(move(time_until_resend)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1241:12: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1241 | m_Name(move(name)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1317:10: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1317 | m_Id(move(id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1318:12: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1318 | m_Text(move(text)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1418:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1418 | return m_Impl->SendRequest(move(request), move(deadline)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1418:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1418 | return m_Impl->SendRequest(move(request), move(deadline)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1433:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1433 | return m_Impl->SendRequestAndGetReply(move(request), move(deadline)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1433:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1433 | return m_Impl->SendRequestAndGetReply(move(request), move(deadline)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1446:34: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1446 | return m_Impl->WaitForEvents(move(deadline)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1479:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1479 | m_Impl->SetUserArgs(move(user_args)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1495:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1495 | m_ItemComplete(move(item_complete)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1496:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1496 | m_ReplyComplete(move(reply_complete)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1497:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1497 | m_NewItem(move(new_item)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1515:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1515 | m_Replies.emplace_back(move(reply), 0); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1536:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1536 | items.emplace_back(move(item)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:63: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:214:88: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 214 | static void s_OnAlloc(uv_handle_t* handle, size_t suggested_size, uv_buf_t* buf) { OnCallback(&SUv_Tcp::OnAlloc, handle, suggested_size, buf); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:215:85: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 215 | static void s_OnRead(uv_stream_t* stream, ssize_t nread, const uv_buf_t* buf) { OnCallback(&SUv_Tcp::OnRead, stream, nread, buf); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:216:58: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 216 | static void s_OnWrite(uv_write_t* req, int status) { OnCallback(&SUv_Tcp::OnWrite, req, status); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:217:62: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 217 | static void s_OnConnect(uv_connect_t* req, int status) { OnCallback(&SUv_Tcp::OnConnect, req, status); } | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:38: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:623:41: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 623 | m_Queue.GetLock()->emplace_back(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:811:21: note: in instantiation of function template specialization 'ncbi::SPSG_AsyncQueue::Emplace &>' requested here 811 | m_Queue.Emplace(req); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:125:18: note: in instantiation of function template specialization 'ncbi::SPSG_CV::WaitUntil' requested here 125 | while (m_Src.WaitUntil(deadline)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:118:29: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 118 | if (!x_CvWait(lock, forward(args)...)) return false; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:78:51: note: in instantiation of function template specialization 'ncbi::SPSG_CV::x_Wait>' requested here 78 | return deadline.IsInfinite() ? x_Wait() : x_Wait(x_GetTP(deadline)); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:26: note: in instantiation of member function 'ncbi::SPSG_CV::x_WaitUntil' requested here 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:125:18: note: in instantiation of function template specialization 'ncbi::SPSG_CV::WaitUntil' requested here 125 | while (m_Src.WaitUntil(deadline)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:72:25: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 72 | SPSG_BlobReader(forward(args)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:354:35: note: in instantiation of function template specialization 'ncbi::SPSG_RStream::SPSG_RStream &, std::pair>>' requested here 354 | blob_data->m_Stream.reset(new SPSG_RStream(item_ts, make_pair(data_id.HasBlobId(), reply->stats))); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:72:25: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 72 | SPSG_BlobReader(forward(args)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:783:58: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 783 | return s_DelimitedOutput(begin(values), end(values), forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:792:5: note: in instantiation of function template specialization 'ncbi::s_DelimitedOutput, std::ostream &, const char (&)[16], char, (lambda at /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:792:66)>' requested here 792 | s_DelimitedOutput(m_ExcludeTSEs, os, "&exclude_blobs=", ',', [](const auto& blob_id) { return blob_id.GetId(); }); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:783:58: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 783 | return s_DelimitedOutput(begin(values), end(values), forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:783:58: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 783 | return s_DelimitedOutput(begin(values), end(values), forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:783:58: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 783 | return s_DelimitedOutput(begin(values), end(values), forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:783:58: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 783 | return s_DelimitedOutput(begin(values), end(values), forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:864:5: note: in instantiation of function template specialization 'ncbi::s_DelimitedOutput, std::ostream &, const char (&)[8], char, (lambda at /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:864:57)>' requested here 864 | s_DelimitedOutput(m_AnnotNames, os, "&names=", ',', [](const auto& name) { return NStr::URLEncode(name, NStr::eUrlEnc_URIQueryValue); }); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:783:58: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 783 | return s_DelimitedOutput(begin(values), end(values), forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:783:58: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 783 | return s_DelimitedOutput(begin(values), end(values), forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:783:58: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 783 | return s_DelimitedOutput(begin(values), end(values), forward(args)...); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:162:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 162 | this->GetLock()->push_back(move(value)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:959:16: note: in instantiation of member function 'ncbi::CPSG_WaitingQueue>::Push' requested here 959 | queue->Push(move(user_reply)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:970:16: note: in instantiation of function template specialization 'ncbi::SPSG_CV>>::WaitUntil &, ncbi::CDeadline, bool, bool>' requested here 970 | if (queue->WaitUntil(queue->Stopped(), move(deadline), false, true)) { | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:118:29: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 118 | if (!x_CvWait(lock, forward(args)...)) return false; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:91:24: note: in instantiation of function template specialization 'ncbi::SPSG_CV>>::x_Wait &>' requested here 91 | return x_Wait(until); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:26: note: in instantiation of function template specialization 'ncbi::SPSG_CV>>::x_WaitUntil' requested here 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:970:16: note: in instantiation of function template specialization 'ncbi::SPSG_CV>>::WaitUntil &, ncbi::CDeadline, bool, bool>' requested here 970 | if (queue->WaitUntil(queue->Stopped(), move(deadline), false, true)) { | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:987:25: note: in instantiation of function template specialization 'ncbi::SPSG_CV<>::WaitUntil' requested here 987 | while (state.change.WaitUntil(deadline)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:118:29: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 118 | if (!x_CvWait(lock, forward(args)...)) return false; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:78:51: note: in instantiation of function template specialization 'ncbi::SPSG_CV<>::x_Wait>' requested here 78 | return deadline.IsInfinite() ? x_Wait() : x_Wait(x_GetTP(deadline)); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:26: note: in instantiation of member function 'ncbi::SPSG_CV<>::x_WaitUntil' requested here 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:987:25: note: in instantiation of function template specialization 'ncbi::SPSG_CV<>::WaitUntil' requested here 987 | while (state.change.WaitUntil(deadline)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:171:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 171 | value = move(locked->front()); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1426:20: note: in instantiation of member function 'ncbi::CPSG_WaitingQueue>::Pop' requested here 1426 | m_Impl->queue->Pop(rv, deadline); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:177:22: note: in instantiation of function template specialization 'ncbi::SPSG_CV>>::WaitUntil &, const ncbi::CDeadline &>' requested here 177 | while (this->WaitUntil(m_Stopped, deadline)); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:1426:20: note: in instantiation of member function 'ncbi::CPSG_WaitingQueue>::Pop' requested here 1426 | m_Impl->queue->Pop(rv, deadline); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp:55: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: 125 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:32: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:136:53: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 136 | void SetFlags(TOptionalFlags flags) { m_Flags = move(flags); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:143:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 143 | void SetUserArgs(SPSG_UserArgs user_args) { m_UserArgs = move(user_args); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:151:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 151 | m_RequestContext(GetCtx(move(request_context))) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:181:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 181 | CPSG_BioId(string id, TType type = {}) : m_Id(move(id)), m_Type(type) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:233:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 233 | : m_Id(move(id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:234:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 234 | m_LastModified(move(last_modified)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:242:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 242 | m_LastModified(move(last_modified)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:268:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 268 | m_Id2Info(move(id2_info)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:319:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 319 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:319:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 319 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:320:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 320 | m_BioId(move(bio_id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:97: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:362:71: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 362 | void ExcludeTSE(CPSG_BlobId blob_id) { m_ExcludeTSEs.emplace_back(move(blob_id)); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:370:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 370 | void SetResendTimeout(CTimeout resend_timeout) { m_ResendTimeout = move(resend_timeout); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:401:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 401 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:401:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 401 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:402:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 402 | m_BioId(move(bio_id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:97: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:463:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 463 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:463:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 463 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:464:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 464 | m_BlobId(move(blob_id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:507:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:507:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:508:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 508 | m_BioIds(move(bio_ids)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:509:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 509 | m_AnnotNames(move(annot_names)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:104: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:124: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:574:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 574 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:574:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 574 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:575:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 575 | m_ChunkId(move(chunk_id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:1334:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1334 | m_RequestContext = GetCtx(move(request_context)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:44: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:167:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 167 | m_Start(move(start)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:168:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 168 | m_Stop(move(stop)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:169:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | m_ServerSide(move(server_side)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:194:106: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 194 | CLogLatencyReport(string filter, TArgs&&... args) : CLogLatencies(forward(args)...), m_Filter(move(filter)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:253:12: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 253 | id(move(i)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:388:38: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 388 | m_Messages.emplace_front(move(message)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:424:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 424 | debug_printout(move(id), params), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:425:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 425 | queue(move(q)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:426:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 426 | stats(move(s)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:564:98: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 564 | SPSG_TimedRequest(shared_ptr r) : m_Id(SPSG_Processor::GetNextId()), m_Request(move(r)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:605:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 605 | auto timed_req = move(queue.front()); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:608:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 608 | return tuple_cat(make_tuple(make_optional(move(timed_req))), move(p)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:608:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 608 | return tuple_cat(make_tuple(make_optional(move(timed_req))), move(p)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:724:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 724 | address(move(a)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:728:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 728 | throttling(address, move(p), l) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:1104:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1104 | m_Service(move(service)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:1105:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1105 | m_Stats(move(stats)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:1107:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1107 | m_QueuesRef(move(queues_ref)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:735:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 735 | full_path(move(p)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:803:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 803 | m_Buffer.args = move(args); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:904:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 904 | item_locked->args = move(args); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:984:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 984 | item.state.AddError(move(chunk), SPSG_Reply::SState::FromRequestStatus(status)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1006:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1006 | item.chunks[index] = move(chunk); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1223:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1223 | Reset(move(error)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1232:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1232 | m_Requests.emplace(stream_id, move(timed_req)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1338:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1338 | m_Stats(move(p)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1558:46: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1558 | } else if (!session->ProcessRequest(*move(timed_req), processor_id, move(req))) { | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1558:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1558 | } else if (!session->ProcessRequest(*move(timed_req), processor_id, move(req))) { | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1583:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1583 | m_Queue.Emplace(*move(timed_req)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1896:27: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1896 | m_Queues[idx].Emplace(move(req)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:63: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:214:88: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 214 | static void s_OnAlloc(uv_handle_t* handle, size_t suggested_size, uv_buf_t* buf) { OnCallback(&SUv_Tcp::OnAlloc, handle, suggested_size, buf); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:215:85: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 215 | static void s_OnRead(uv_stream_t* stream, ssize_t nread, const uv_buf_t* buf) { OnCallback(&SUv_Tcp::OnRead, stream, nread, buf); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:216:58: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 216 | static void s_OnWrite(uv_write_t* req, int status) { OnCallback(&SUv_Tcp::OnWrite, req, status); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:211:33: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 211 | (that->*member)(handle, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:217:62: note: in instantiation of function template specialization 'ncbi::SUv_Tcp::OnCallback' requested here 217 | static void s_OnConnect(uv_connect_t* req, int status) { OnCallback(&SUv_Tcp::OnConnect, req, status); } | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:623:41: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 623 | m_Queue.GetLock()->emplace_back(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:811:21: note: in instantiation of function template specialization 'ncbi::SPSG_AsyncQueue::Emplace &>' requested here 811 | m_Queue.Emplace(req); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:485:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 485 | case eRequest: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:476:5: note: in instantiation of function template specialization 'ncbi::SPSG_StatsCounters::Apply>> &>' requested here 476 | Apply(eRequest, m_Data); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:486:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 486 | case eReplyItem: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:487:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 487 | case eSkippedBlob: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:488:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 488 | case eReplyItemStatus: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:489:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 489 | case eMessage: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:490:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 490 | case eRetries: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:497:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 497 | Apply(eRequest, m_Data, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:593:25: note: in instantiation of function template specialization 'ncbi::SPSG_StatsCounters::Report' requested here 593 | SPSG_StatsCounters::Report(prefix, report); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:497:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 497 | Apply(eRequest, m_Data, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:485:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 485 | case eRequest: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:497:5: note: in instantiation of function template specialization 'ncbi::SPSG_StatsCounters::Apply>> &, const char *const &, const unsigned int &>' requested here 497 | Apply(eRequest, m_Data, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:593:25: note: in instantiation of function template specialization 'ncbi::SPSG_StatsCounters::Report' requested here 593 | SPSG_StatsCounters::Report(prefix, report); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:485:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 485 | case eRequest: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:485:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 485 | case eRequest: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:486:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 486 | case eReplyItem: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:486:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 486 | case eReplyItem: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:486:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 486 | case eReplyItem: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:487:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 487 | case eSkippedBlob: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:487:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 487 | case eSkippedBlob: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:487:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 487 | case eSkippedBlob: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:488:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 488 | case eReplyItemStatus: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:488:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 488 | case eReplyItemStatus: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:488:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 488 | case eReplyItemStatus: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:489:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 489 | case eMessage: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:489:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 489 | case eMessage: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:489:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 489 | case eMessage: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:490:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 490 | case eRetries: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:490:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 490 | case eRetries: TWhat::template Func (forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:490:74: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 490 | case eRetries: TWhat::template Func (forward(args)...); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:710:23: note: in instantiation of function template specialization 'ncbi::SPSG_CV::WaitUntil &, ncbi::CDeadline &, bool, bool>' requested here 710 | while (reply_item.WaitUntil(reply_item->state.InProgress(), deadline, false, true)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:38: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:118:29: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 118 | if (!x_CvWait(lock, forward(args)...)) return false; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:91:24: note: in instantiation of function template specialization 'ncbi::SPSG_CV::x_Wait &>' requested here 91 | return x_Wait(until); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:65:26: note: in instantiation of function template specialization 'ncbi::SPSG_CV::x_WaitUntil' requested here 65 | return GetThis().x_WaitUntil(forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:710:23: note: in instantiation of function template specialization 'ncbi::SPSG_CV::WaitUntil &, ncbi::CDeadline &, bool, bool>' requested here 710 | while (reply_item.WaitUntil(reply_item->state.InProgress(), deadline, false, true)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:347:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 347 | return { move(*this), &next_arg }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:857:35: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 857 | reply->debug_printout << args << m_Buffer.chunk << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:313:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 313 | SPack(move(base)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:347:16: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::SPack' requested here 347 | return { move(*this), &next_arg }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:857:35: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 857 | reply->debug_printout << args << m_Buffer.chunk << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here 329 | SPack::Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:323:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 323 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:857:53: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 857 | reply->debug_printout << args << m_Buffer.chunk << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::Process' requested here 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here 329 | SPack::Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:323:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 323 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:857:53: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 857 | reply->debug_printout << args << m_Buffer.chunk << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:347:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 347 | return { move(*this), &next_arg }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1096:42: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1096 | reply->debug_printout << retries << error << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:313:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 313 | SPack(move(base)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:347:16: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::SPack' requested here 347 | return { move(*this), &next_arg }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1096:42: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1096 | reply->debug_printout << retries << error << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here 329 | SPack::Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:323:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 323 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1096:51: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1096 | reply->debug_printout << retries << error << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::Process' requested here 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here 329 | SPack::Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:323:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 323 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1096:51: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1096 | reply->debug_printout << retries << error << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::Process' requested here 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:350:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 350 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1111:36: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1111 | reply->debug_printout << error << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::Process' requested here 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:350:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 350 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1139:42: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1139 | debug_printout << error_code << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:347:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 347 | return { move(*this), &next_arg }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:50: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:313:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 313 | SPack(move(base)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:347:16: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::SPack' requested here 347 | return { move(*this), &next_arg }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:50: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:320:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 320 | return { move(*this), &next_arg }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:58: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:313:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 313 | SPack(move(base)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:320:16: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::SPack' requested here 320 | return { move(*this), &next_arg }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:58: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:320:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 320 | return { move(*this), &next_arg }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:72: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:313:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 313 | SPack(move(base)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:320:16: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::SPack' requested here 320 | return { move(*this), &next_arg }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:72: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:320:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 320 | return { move(*this), &next_arg }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:86: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:313:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 313 | SPack(move(base)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:320:16: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::SPack' requested here 320 | return { move(*this), &next_arg }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:86: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:320:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 320 | return { move(*this), &next_arg }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:99: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:313:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 313 | SPack(move(base)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:320:16: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::SPack' requested here 320 | return { move(*this), &next_arg }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:99: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 329 | SPack::Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here 329 | SPack::Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:323:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 323 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:123: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 329 | SPack::Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here 329 | SPack::Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:323:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 323 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:123: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 329 | SPack::Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 329 | SPack::Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here 329 | SPack::Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:323:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 323 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:123: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 329 | SPack::Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 329 | SPack::Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 329 | SPack::Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here 329 | SPack::Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:323:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 323 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:123: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 329 | SPack::Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 329 | SPack::Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 329 | SPack::Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here 329 | SPack::Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:323:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 323 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:123: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:42: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:356:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::Process' requested here 356 | m_DebugPrintout->Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here 329 | SPack::Process(*m_Arg, forward(args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:329:26: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process' requested here /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:323:47: note: in instantiation of function template specialization 'ncbi::SDebugPrintout::SPack::Process<>' requested here 323 | void operator<<(ostream& (*)(ostream&)) { Process(); } | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1230:123: note: in instantiation of member function 'ncbi::SDebugPrintout::SPack::operator<<' requested here 1230 | req->reply->debug_printout << server.address << path << session_id << sub_hit_id << client_ip << m_Tcp.GetLocalPort() << endl; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:271:36: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 271 | if (IsPerf()) return Event(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:275:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 275 | Print(forward(args)...); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:63: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:85:54: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 85 | SUvNgHttp2_Error& operator<<(T&& v) { m_Value << forward(v); return *this; } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1267:11: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Error::operator<<' requested here 1267 | error << GetId(); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp:44: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/connect_misc.hpp:137:45: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 137 | SThreadSafe(TArgs&&... args) : m_Object(forward(args)...) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1338:5: note: in instantiation of function template specialization 'ncbi::SThreadSafe::SThreadSafe' requested here 1338 | m_Stats(move(p)), | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:63: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ | std:: /usr/include/c++/v1/__memory/allocator.h:173:24: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Session::SUvNgHttp2_Session' requested here 173 | ::new ((void*)__p) _Up(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator>::construct, ncbi::SPSG_Server &, ncbi::SPSG_Params &, ncbi::SPSG_AsyncQueue &, uv_loop_s *&>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/deque:1587:19: note: in instantiation of function template specialization 'std::allocator_traits>>::construct, ncbi::SPSG_Server &, ncbi::SPSG_Params &, ncbi::SPSG_AsyncQueue &, uv_loop_s *&, void>' requested here 1587 | __alloc_traits::construct(__a, std::addressof(*end()), std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1464:44: note: in instantiation of function template specialization 'std::deque>::emplace_back' requested here 1464 | m_Sessions.emplace_back().sessions.emplace_back(server, m_Params, m_Queue, handle->loop); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:63: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1042:13: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 1042 | forward(callbacks)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:9: note: in instantiation of function template specialization 'ncbi::SPSG_IoSession::SPSG_IoSession' requested here 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ /usr/include/c++/v1/__memory/allocator.h:173:24: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Session::SUvNgHttp2_Session' requested here 173 | ::new ((void*)__p) _Up(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator>::construct, ncbi::SPSG_Server &, ncbi::SPSG_Params &, ncbi::SPSG_AsyncQueue &, uv_loop_s *&>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/deque:1587:19: note: in instantiation of function template specialization 'std::allocator_traits>>::construct, ncbi::SPSG_Server &, ncbi::SPSG_Params &, ncbi::SPSG_AsyncQueue &, uv_loop_s *&, void>' requested here 1587 | __alloc_traits::construct(__a, std::addressof(*end()), std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1464:44: note: in instantiation of function template specialization 'std::deque>::emplace_back' requested here 1464 | m_Sessions.emplace_back().sessions.emplace_back(server, m_Params, m_Queue, handle->loop); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1042:13: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 1042 | forward(callbacks)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1042:13: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 1042 | forward(callbacks)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1042:13: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 1042 | forward(callbacks)...), | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:63: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1035:5: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_SessionBase::SUvNgHttp2_SessionBase' requested here 1035 | SUvNgHttp2_SessionBase( | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:9: note: in instantiation of function template specialization 'ncbi::SPSG_IoSession::SPSG_IoSession' requested here 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ /usr/include/c++/v1/__memory/allocator.h:173:24: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Session::SUvNgHttp2_Session' requested here 173 | ::new ((void*)__p) _Up(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator>::construct, ncbi::SPSG_Server &, ncbi::SPSG_Params &, ncbi::SPSG_AsyncQueue &, uv_loop_s *&>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/deque:1587:19: note: in instantiation of function template specialization 'std::allocator_traits>>::construct, ncbi::SPSG_Server &, ncbi::SPSG_Params &, ncbi::SPSG_AsyncQueue &, uv_loop_s *&, void>' requested here 1587 | __alloc_traits::construct(__a, std::addressof(*end()), std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1464:44: note: in instantiation of function template specialization 'std::deque>::emplace_back' requested here 1464 | m_Sessions.emplace_back().sessions.emplace_back(server, m_Params, m_Queue, handle->loop); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:63: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:551:21: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 551 | m_Session(this, forward(args)...) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:493:79: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 493 | return [this, member](TArgs&&... args) -> TR { return (this->*member)(forward(args)...); }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:493:54: note: while substituting into a lambda expression here 493 | return [this, member](TArgs&&... args) -> TR { return (this->*member)(forward(args)...); }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:547:13: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_SessionBase::BindThis' requested here 547 | BindThis(&SUvNgHttp2_SessionBase::OnConnect), | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1035:5: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_SessionBase::SUvNgHttp2_SessionBase' requested here 1035 | SUvNgHttp2_SessionBase( | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:9: note: in instantiation of function template specialization 'ncbi::SPSG_IoSession::SPSG_IoSession' requested here 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ /usr/include/c++/v1/__memory/allocator.h:173:24: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Session::SUvNgHttp2_Session' requested here 173 | ::new ((void*)__p) _Up(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator>::construct, ncbi::SPSG_Server &, ncbi::SPSG_Params &, ncbi::SPSG_AsyncQueue &, uv_loop_s *&>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/deque:1587:19: note: in instantiation of function template specialization 'std::allocator_traits>>::construct, ncbi::SPSG_Server &, ncbi::SPSG_Params &, ncbi::SPSG_AsyncQueue &, uv_loop_s *&, void>' requested here 1587 | __alloc_traits::construct(__a, std::addressof(*end()), std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1464:44: note: in instantiation of function template specialization 'std::deque>::emplace_back' requested here 1464 | m_Sessions.emplace_back().sessions.emplace_back(server, m_Params, m_Queue, handle->loop); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:63: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:493:79: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 493 | return [this, member](TArgs&&... args) -> TR { return (this->*member)(forward(args)...); }; | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:493:54: note: while substituting into a lambda expression here 493 | return [this, member](TArgs&&... args) -> TR { return (this->*member)(forward(args)...); }; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:548:13: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_SessionBase::BindThis' requested here 548 | BindThis(&SUvNgHttp2_SessionBase::OnRead), | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1035:5: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_SessionBase::SUvNgHttp2_SessionBase' requested here 1035 | SUvNgHttp2_SessionBase( | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:508:9: note: in instantiation of function template specialization 'ncbi::SPSG_IoSession::SPSG_IoSession' requested here 508 | TImpl(forward(args)..., s_OnData, s_OnStreamClose, s_OnHeader, s_OnError) | ^ /usr/include/c++/v1/__memory/allocator.h:173:24: note: in instantiation of function template specialization 'ncbi::SUvNgHttp2_Session::SUvNgHttp2_Session' requested here 173 | ::new ((void*)__p) _Up(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator>::construct, ncbi::SPSG_Server &, ncbi::SPSG_Params &, ncbi::SPSG_AsyncQueue &, uv_loop_s *&>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/deque:1587:19: note: in instantiation of function template specialization 'std::allocator_traits>>::construct, ncbi::SPSG_Server &, ncbi::SPSG_Params &, ncbi::SPSG_AsyncQueue &, uv_loop_s *&, void>' requested here 1587 | __alloc_traits::construct(__a, std::addressof(*end()), std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1464:44: note: in instantiation of function template specialization 'std::deque>::emplace_back' requested here 1464 | m_Sessions.emplace_back().sessions.emplace_back(server, m_Params, m_Queue, handle->loop); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:63: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/impl/ncbi_uv_nghttp2.hpp:493:79: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 493 | return [this, member](TArgs&&... args) -> TR { return (this->*member)(forward(args)...); }; | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:623:41: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 623 | m_Queue.GetLock()->emplace_back(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1583:17: note: in instantiation of function template specialization 'ncbi::SPSG_AsyncQueue::Emplace' requested here 1583 | m_Queue.Emplace(*move(timed_req)); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:905:29: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 905 | TBase::emplace_back(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1732:21: note: in instantiation of function template specialization 'ncbi::SPSG_Servers::emplace_back> &, ncbi::SPSG_ThrottleParams &, uv_loop_s *&>' requested here 1732 | servers.emplace_back(server.first, rate, m_Params.max_concurrent_requests_per_server, m_ThrottleParams, handle->loop); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:905:29: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 905 | TBase::emplace_back(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:905:29: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 905 | TBase::emplace_back(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:905:29: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 905 | TBase::emplace_back(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:905:29: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 905 | TBase::emplace_back(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:831:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 831 | TImpl(forward(args)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1862:5: note: in instantiation of function template specialization 'ncbi::SPSG_Thread::SPSG_Thread &, ncbi::SPSG_Params &, ncbi::SThreadSafe &, std::deque &>' requested here 1862 | m_Discovery(m_StartBarrier, m_StopBarrier, 0, s_GetDiscoveryRepeat(service), service, stats, params, m_Servers, m_Queues), | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:831:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 831 | TImpl(forward(args)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:831:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 831 | TImpl(forward(args)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:831:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 831 | TImpl(forward(args)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:831:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 831 | TImpl(forward(args)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:831:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 831 | TImpl(forward(args)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1871:35: note: in instantiation of function template specialization 'ncbi::SPSG_Thread::SPSG_Thread &, ncbi::SPSG_AsyncQueue &>' requested here 1871 | m_Io.emplace_back(new SPSG_Thread(m_StartBarrier, m_StopBarrier, io_timer_period, io_timer_period, params, m_Servers, m_Queues.emplace_back(m_Queues))); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:56: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:831:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 831 | TImpl(forward(args)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:831:15: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 831 | TImpl(forward(args)...), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp:623:41: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 623 | m_Queue.GetLock()->emplace_back(forward(args)...); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp:1896:19: note: in instantiation of function template specialization 'ncbi::SPSG_AsyncQueue::Emplace>' requested here 1896 | m_Queues[idx].Emplace(move(req)); | ^ 196 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libpsg_client.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libpsg_client.a /bin/ln -f .psg_client.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.psg_client.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /usr/local/bin/gmake -C test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[6]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/client' /usr/local/bin/gmake -C protobuf all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/protobuf' /usr/local/bin/gmake -C cache all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/cache' /usr/local/bin/gmake -C ipg all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/ipg' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' /usr/local/bin/gmake -C data_loaders all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT lds2/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT patcher/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT cdd/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /usr/local/bin/gmake -C genbank all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT pubseq/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT pubseq2/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader export-headers gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank export-headers gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/rwstream.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/wgsmaster.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/wgsmaster.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/wgsmaster.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/seqref.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/seqref.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/seqref.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:83:10: warning: 'LoadSeq_idSeq_ids' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 83 | bool LoadSeq_idSeq_ids(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:105:18: note: overridden virtual function is here 105 | virtual bool LoadSeq_idSeq_ids(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:85:10: warning: 'LoadSeq_idGi' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 85 | bool LoadSeq_idGi(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:107:18: note: overridden virtual function is here 107 | virtual bool LoadSeq_idGi(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:87:10: warning: 'LoadSeq_idAccVer' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 87 | bool LoadSeq_idAccVer(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:109:18: note: overridden virtual function is here 109 | virtual bool LoadSeq_idAccVer(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:89:10: warning: 'LoadSeq_idLabel' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 89 | bool LoadSeq_idLabel(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:111:18: note: overridden virtual function is here 111 | virtual bool LoadSeq_idLabel(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:91:10: warning: 'LoadSeq_idTaxId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 91 | bool LoadSeq_idTaxId(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:113:18: note: overridden virtual function is here 113 | virtual bool LoadSeq_idTaxId(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:93:10: warning: 'LoadSequenceHash' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 93 | bool LoadSequenceHash(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:115:18: note: overridden virtual function is here 115 | virtual bool LoadSequenceHash(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:95:10: warning: 'LoadSequenceLength' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 95 | bool LoadSequenceLength(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:117:18: note: overridden virtual function is here 117 | virtual bool LoadSequenceLength(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:97:10: warning: 'LoadSequenceType' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 97 | bool LoadSequenceType(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:119:18: note: overridden virtual function is here 119 | virtual bool LoadSequenceType(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:99:10: warning: 'LoadSeq_idBlob_ids' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 99 | bool LoadSeq_idBlob_ids(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:102:18: note: overridden virtual function is here 102 | virtual bool LoadSeq_idBlob_ids(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:103:10: warning: 'LoadAccVers' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 103 | bool LoadAccVers(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:133:18: note: overridden virtual function is here 133 | virtual bool LoadAccVers(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:105:10: warning: 'LoadGis' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 105 | bool LoadGis(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:135:18: note: overridden virtual function is here 135 | virtual bool LoadGis(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:107:10: warning: 'LoadLabels' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 107 | bool LoadLabels(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:137:18: note: overridden virtual function is here 137 | virtual bool LoadLabels(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:109:10: warning: 'LoadTaxIds' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 109 | bool LoadTaxIds(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:139:18: note: overridden virtual function is here 139 | virtual bool LoadTaxIds(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:111:10: warning: 'LoadHashes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 111 | bool LoadHashes(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:141:18: note: overridden virtual function is here 141 | virtual bool LoadHashes(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:114:10: warning: 'LoadLengths' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 114 | bool LoadLengths(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:144:18: note: overridden virtual function is here 144 | virtual bool LoadLengths(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:116:10: warning: 'LoadTypes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 116 | bool LoadTypes(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:146:18: note: overridden virtual function is here 146 | virtual bool LoadTypes(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:118:10: warning: 'LoadStates' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 118 | bool LoadStates(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:148:18: note: overridden virtual function is here 148 | virtual bool LoadStates(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:121:10: warning: 'LoadBlobState' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 121 | bool LoadBlobState(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:151:18: note: overridden virtual function is here 151 | virtual bool LoadBlobState(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:123:10: warning: 'LoadBlobVersion' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 123 | bool LoadBlobVersion(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:153:18: note: overridden virtual function is here 153 | virtual bool LoadBlobVersion(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:126:10: warning: 'LoadBlobs' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 126 | bool LoadBlobs(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:156:18: note: overridden virtual function is here 156 | virtual bool LoadBlobs(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:130:10: warning: 'LoadBlobs' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 130 | bool LoadBlobs(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:160:18: note: overridden virtual function is here 160 | virtual bool LoadBlobs(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:134:10: warning: 'LoadBlob' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 134 | bool LoadBlob(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:164:18: note: overridden virtual function is here 164 | virtual bool LoadBlob(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:136:10: warning: 'LoadChunk' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 136 | bool LoadChunk(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:168:18: note: overridden virtual function is here 168 | virtual bool LoadChunk(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:138:10: warning: 'LoadChunks' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 138 | bool LoadChunks(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:170:18: note: overridden virtual function is here 170 | virtual bool LoadChunks(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:35: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:141:10: warning: 'LoadBlobSet' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 141 | bool LoadBlobSet(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:173:18: note: overridden virtual function is here 173 | virtual bool LoadBlobSet(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 28 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/incr_time.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/incr_time.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/incr_time.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:398:12: warning: variable 'unused_count' set but not used [-Wunused-but-set-variable] 398 | size_t unused_count = 0, used_count = 0; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:398:30: warning: variable 'used_count' set but not used [-Wunused-but-set-variable] 398 | size_t unused_count = 0, used_count = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -shared -o libncbi_xreader-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O -fPIC dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/psg_loader.hpp:38: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:136:53: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 136 | void SetFlags(TOptionalFlags flags) { m_Flags = move(flags); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:143:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 143 | void SetUserArgs(SPSG_UserArgs user_args) { m_UserArgs = move(user_args); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:151:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 151 | m_RequestContext(GetCtx(move(request_context))) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:181:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 181 | CPSG_BioId(string id, TType type = {}) : m_Id(move(id)), m_Type(type) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:233:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 233 | : m_Id(move(id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:234:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 234 | m_LastModified(move(last_modified)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:242:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 242 | m_LastModified(move(last_modified)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:268:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 268 | m_Id2Info(move(id2_info)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:319:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 319 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:319:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 319 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:320:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 320 | m_BioId(move(bio_id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:97: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:362:71: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 362 | void ExcludeTSE(CPSG_BlobId blob_id) { m_ExcludeTSEs.emplace_back(move(blob_id)); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:370:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 370 | void SetResendTimeout(CTimeout resend_timeout) { m_ResendTimeout = move(resend_timeout); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:401:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 401 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:401:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 401 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:402:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 402 | m_BioId(move(bio_id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:97: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:463:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 463 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:463:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 463 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:464:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 464 | m_BlobId(move(blob_id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:507:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:507:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:508:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 508 | m_BioIds(move(bio_ids)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:509:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 509 | m_AnnotNames(move(annot_names)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:104: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:124: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:574:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 574 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:574:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 574 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:575:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 575 | m_ChunkId(move(chunk_id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:1334:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1334 | m_RequestContext = GetCtx(move(request_context)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 40 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/gbload_util.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/gbload_util.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/gbload_util.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:48: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/psg_loader.hpp:38: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:136:53: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 136 | void SetFlags(TOptionalFlags flags) { m_Flags = move(flags); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:143:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 143 | void SetUserArgs(SPSG_UserArgs user_args) { m_UserArgs = move(user_args); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:151:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 151 | m_RequestContext(GetCtx(move(request_context))) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:181:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 181 | CPSG_BioId(string id, TType type = {}) : m_Id(move(id)), m_Type(type) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:233:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 233 | : m_Id(move(id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:234:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 234 | m_LastModified(move(last_modified)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:242:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 242 | m_LastModified(move(last_modified)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:268:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 268 | m_Id2Info(move(id2_info)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:319:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 319 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:319:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 319 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:320:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 320 | m_BioId(move(bio_id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:97: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:362:71: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 362 | void ExcludeTSE(CPSG_BlobId blob_id) { m_ExcludeTSEs.emplace_back(move(blob_id)); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:370:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 370 | void SetResendTimeout(CTimeout resend_timeout) { m_ResendTimeout = move(resend_timeout); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:401:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 401 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:401:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 401 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:402:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 402 | m_BioId(move(bio_id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:97: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:463:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 463 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:463:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 463 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:464:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 464 | m_BlobId(move(blob_id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:507:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:507:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:508:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 508 | m_BioIds(move(bio_ids)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:509:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 509 | m_AnnotNames(move(annot_names)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:104: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:124: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:574:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 574 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:574:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 574 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:575:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 575 | m_ChunkId(move(chunk_id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:1334:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1334 | m_RequestContext = GetCtx(move(request_context)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 40 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:51: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/psg_loader_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/psg_loader.hpp:38: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:136:53: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 136 | void SetFlags(TOptionalFlags flags) { m_Flags = move(flags); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:143:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 143 | void SetUserArgs(SPSG_UserArgs user_args) { m_UserArgs = move(user_args); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:151:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 151 | m_RequestContext(GetCtx(move(request_context))) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:181:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 181 | CPSG_BioId(string id, TType type = {}) : m_Id(move(id)), m_Type(type) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:233:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 233 | : m_Id(move(id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:234:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 234 | m_LastModified(move(last_modified)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:242:26: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 242 | m_LastModified(move(last_modified)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:268:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 268 | m_Id2Info(move(id2_info)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:319:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 319 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:319:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 319 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:320:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 320 | m_BioId(move(bio_id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:327:97: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 327 | : CPSG_Request_Biodata(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:362:71: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 362 | void ExcludeTSE(CPSG_BlobId blob_id) { m_ExcludeTSEs.emplace_back(move(blob_id)); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:370:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 370 | void SetResendTimeout(CTimeout resend_timeout) { m_ResendTimeout = move(resend_timeout); } | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:401:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 401 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:401:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 401 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:402:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 402 | m_BioId(move(bio_id)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:32: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:77: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:409:97: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 409 | : CPSG_Request_Resolve(move(bio_id), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:463:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 463 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:463:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 463 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:464:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 464 | m_BlobId(move(blob_id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:507:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:507:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:508:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 508 | m_BioIds(move(bio_ids)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:509:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 509 | m_AnnotNames(move(annot_names)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:104: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:521:124: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 521 | : CPSG_Request_NamedAnnotInfo(move(bio_ids), move(annot_names), EPSG_BioIdResolution::Resolve, move(user_context), move(request_context)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:574:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 574 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:574:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 574 | : CPSG_Request(move(user_context), move(request_context)), | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:575:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 575 | m_ChunkId(move(chunk_id)) | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:1334:31: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1334 | m_RequestContext = GetCtx(move(request_context)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:1522:54: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1522 | auto request = make_shared(move(bio_id)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:1575:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1575 | auto request = make_shared(move(bio_id)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:2237:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 2237 | auto request = make_shared(move(bio_id)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:3012:69: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 3012 | auto request = make_shared(move(bio_ids), annot_names); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:3093:61: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 3093 | auto request = make_shared(move(bio_ids), annot_names); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:3218:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 3218 | move(bio_ids), annot_names, make_shared(i)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:3621:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 3621 | shared_ptr request = make_shared(move(bio_id)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:3798:59: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 3798 | auto request2 = make_shared(move(bio_id)); | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:3992:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 3992 | shared_ptr request = make_shared(move(bio_id)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:51: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/psg_loader_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/psg_loader.hpp:38: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp:528:60: warning: unqualified call to 'std::forward' [-Wunqualified-std-cast-call] 528 | : CPSG_Request_NamedAnnotInfo(CPSG_BioIds{bio_id}, forward(args)...) | ^ | std:: /usr/include/c++/v1/__memory/allocator.h:173:24: note: in instantiation of function template specialization 'ncbi::CPSG_Request_NamedAnnotInfo::CPSG_Request_NamedAnnotInfo &>' requested here 173 | ::new ((void*)__p) _Up(std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/allocator_traits.h:296:9: note: in instantiation of function template specialization 'std::allocator::construct &>' requested here 296 | __a.construct(__p, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/shared_ptr.h:265:33: note: in instantiation of function template specialization 'std::allocator_traits>::construct &, void>' requested here 265 | allocator_traits<_TpAlloc>::construct(__tmp, __get_elem(), std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/shared_ptr.h:823:51: note: in instantiation of function template specialization 'std::__shared_ptr_emplace>::__shared_ptr_emplace &, std::allocator, 0>' requested here 823 | ::new ((void*)std::addressof(*__guard.__get())) _ControlBlock(__a, std::forward<_Args>(__args)...); | ^ /usr/include/c++/v1/__memory/shared_ptr.h:831:15: note: in instantiation of function template specialization 'std::allocate_shared, ncbi::CPSG_BioId &, std::vector &, void>' requested here 831 | return std::allocate_shared<_Tp>(allocator<_Tp>(), std::forward<_Args>(__args)...); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:2644:24: note: in instantiation of function template specialization 'std::make_shared &, void>' requested here 2644 | auto request = make_shared(bio_id, names); | ^ 50 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -shared -o libncbi_xloader_genbank-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lgeneral -lncbi_xreader-dll -lpsg_client -lxconnserv -lxxconnect2 -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -ldw -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -C cache all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache export-headers gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -shared -o libncbi_xreader_cache-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O -fPIC reader_cache.o writer_cache.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -ldw -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/local/bin/gmake -C pubseq all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /usr/local/bin/gmake -C id2 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 export-headers gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:83:10: warning: 'LoadSeq_idSeq_ids' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 83 | bool LoadSeq_idSeq_ids(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:105:18: note: overridden virtual function is here 105 | virtual bool LoadSeq_idSeq_ids(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:85:10: warning: 'LoadSeq_idGi' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 85 | bool LoadSeq_idGi(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:107:18: note: overridden virtual function is here 107 | virtual bool LoadSeq_idGi(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:87:10: warning: 'LoadSeq_idAccVer' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 87 | bool LoadSeq_idAccVer(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:109:18: note: overridden virtual function is here 109 | virtual bool LoadSeq_idAccVer(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:89:10: warning: 'LoadSeq_idLabel' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 89 | bool LoadSeq_idLabel(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:111:18: note: overridden virtual function is here 111 | virtual bool LoadSeq_idLabel(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:91:10: warning: 'LoadSeq_idTaxId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 91 | bool LoadSeq_idTaxId(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:113:18: note: overridden virtual function is here 113 | virtual bool LoadSeq_idTaxId(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:93:10: warning: 'LoadSequenceHash' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 93 | bool LoadSequenceHash(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:115:18: note: overridden virtual function is here 115 | virtual bool LoadSequenceHash(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:95:10: warning: 'LoadSequenceLength' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 95 | bool LoadSequenceLength(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:117:18: note: overridden virtual function is here 117 | virtual bool LoadSequenceLength(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:97:10: warning: 'LoadSequenceType' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 97 | bool LoadSequenceType(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:119:18: note: overridden virtual function is here 119 | virtual bool LoadSequenceType(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:99:10: warning: 'LoadSeq_idBlob_ids' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 99 | bool LoadSeq_idBlob_ids(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:102:18: note: overridden virtual function is here 102 | virtual bool LoadSeq_idBlob_ids(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:103:10: warning: 'LoadAccVers' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 103 | bool LoadAccVers(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:133:18: note: overridden virtual function is here 133 | virtual bool LoadAccVers(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:105:10: warning: 'LoadGis' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 105 | bool LoadGis(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:135:18: note: overridden virtual function is here 135 | virtual bool LoadGis(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:107:10: warning: 'LoadLabels' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 107 | bool LoadLabels(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:137:18: note: overridden virtual function is here 137 | virtual bool LoadLabels(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:109:10: warning: 'LoadTaxIds' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 109 | bool LoadTaxIds(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:139:18: note: overridden virtual function is here 139 | virtual bool LoadTaxIds(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:111:10: warning: 'LoadHashes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 111 | bool LoadHashes(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:141:18: note: overridden virtual function is here 141 | virtual bool LoadHashes(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:114:10: warning: 'LoadLengths' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 114 | bool LoadLengths(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:144:18: note: overridden virtual function is here 144 | virtual bool LoadLengths(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:116:10: warning: 'LoadTypes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 116 | bool LoadTypes(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:146:18: note: overridden virtual function is here 146 | virtual bool LoadTypes(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:118:10: warning: 'LoadStates' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 118 | bool LoadStates(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:148:18: note: overridden virtual function is here 148 | virtual bool LoadStates(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:121:10: warning: 'LoadBlobState' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 121 | bool LoadBlobState(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:151:18: note: overridden virtual function is here 151 | virtual bool LoadBlobState(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:123:10: warning: 'LoadBlobVersion' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 123 | bool LoadBlobVersion(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:153:18: note: overridden virtual function is here 153 | virtual bool LoadBlobVersion(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:126:10: warning: 'LoadBlobs' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 126 | bool LoadBlobs(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:156:18: note: overridden virtual function is here 156 | virtual bool LoadBlobs(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:130:10: warning: 'LoadBlobs' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 130 | bool LoadBlobs(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:160:18: note: overridden virtual function is here 160 | virtual bool LoadBlobs(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:134:10: warning: 'LoadBlob' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 134 | bool LoadBlob(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:164:18: note: overridden virtual function is here 164 | virtual bool LoadBlob(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:136:10: warning: 'LoadChunk' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 136 | bool LoadChunk(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:168:18: note: overridden virtual function is here 168 | virtual bool LoadChunk(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:138:10: warning: 'LoadChunks' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 138 | bool LoadChunks(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:170:18: note: overridden virtual function is here 170 | virtual bool LoadChunks(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:141:10: warning: 'LoadBlobSet' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 141 | bool LoadBlobSet(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:173:18: note: overridden virtual function is here 173 | virtual bool LoadBlobSet(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 28 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -shared -o libncbi_xreader_id2-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O -fPIC reader_id2.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -ldw -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/local/bin/gmake -C id1 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 export-headers gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -shared -o libncbi_xreader_id1-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O -fPIC reader_id1.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -ldw -lm -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/local/bin/gmake -C pubseq2 all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /usr/local/bin/gmake -C gicache all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache export-headers gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_param.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] 289 | char logmsg[256]; | ^~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] 635 | int acc_len; | ^~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] 833 | char meta[512], stime[128]; | ^~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] 833 | char meta[512], stime[128]; | ^~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] 984 | int64_t gi_len = 0; | ^~~~~~ 5 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -shared -o libncbi_xreader_gicache-dll.so -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O -fPIC reader_gicache.o gicache.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -pthread /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.so /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so /bin/ln -f .ncbi_xreader_gicache-dll.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/local/bin/gmake -C test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/local/bin/gmake -C lds2 all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /usr/local/bin/gmake -C blastdb all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb export-headers gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt export-headers gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:144:21: warning: variable 'length' set but not used [-Wunused-but-set-variable] 144 | TSeqPos length = m_SeqDB->GetSequence(oid, &buffer); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/local/bin/gmake -C patcher all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /usr/local/bin/gmake -C asn_cache all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /usr/local/bin/gmake -C cdd all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/data_loaders' /usr/local/bin/gmake -C simple all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/simple TMPL=xobjsimple export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/simple TMPL=xobjsimple flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/simple TMPL=xobjsimple all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/simple/simple_om.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/simple/simple_om.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/simple/simple_om.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/simple/simple_om.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/simple/simple_om.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/simple/simple_om.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/simple/simple_om.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/simple' /usr/local/bin/gmake -C alnmgr all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:252:16: warning: variable 'seg' set but not used [-Wunused-but-set-variable] 252 | size_t seg = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alndiag.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alndiag.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/align_range.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alndiag.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alndiag.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/align_range.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alndiag.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alndiag.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/align_range.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: '&&' within '||' [-Wlogical-op-parentheses] 76 | match1->m_ChainScore == match2->m_ChainScore && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 77 | match1->m_Score > match2->m_Score || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: note: place parentheses around the '&&' expression to silence this warning 76 | match1->m_ChainScore == match2->m_ChainScore && | ^ | ( 77 | match1->m_Score > match2->m_Score || | ) /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 192 | (aln_seq1->m_StrandScore > 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 193 | strand1 == eNa_strand_minus || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: note: place parentheses around the '&&' expression to silence this warning 192 | (aln_seq1->m_StrandScore > 0 && | ^ | ( 193 | strand1 == eNa_strand_minus || | ) /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 193 | strand1 == eNa_strand_minus || | ~~ 194 | aln_seq1->m_StrandScore < 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 195 | strand1 != eNa_strand_minus || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:194:59: note: place parentheses around the '&&' expression to silence this warning 194 | aln_seq1->m_StrandScore < 0 && | ^ | ( 195 | strand1 != eNa_strand_minus || | ) /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 195 | strand1 != eNa_strand_minus || | ~~ 196 | aln_seq2->m_StrandScore > 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 197 | strand2 == eNa_strand_minus || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: note: place parentheses around the '&&' expression to silence this warning 196 | aln_seq2->m_StrandScore > 0 && | ^ | ( 197 | strand2 == eNa_strand_minus || | ) /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 197 | strand2 == eNa_strand_minus || | ~~ 198 | aln_seq2->m_StrandScore < 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 199 | strand2 != eNa_strand_minus)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: note: place parentheses around the '&&' expression to silence this warning 198 | aln_seq2->m_StrandScore < 0 && | ^ | ( 199 | strand2 != eNa_strand_minus)) { | | ) In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: '&&' within '||' [-Wlogical-op-parentheses] 311 | if (plus && prev_start_plus_len < start || | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: note: place parentheses around the '&&' expression to silence this warning 311 | if (plus && prev_start_plus_len < start || | ^ | ( ) /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: warning: '&&' within '||' [-Wlogical-op-parentheses] 311 | if (plus && prev_start_plus_len < start || | ~~ 312 | !plus && start_plus_len < (TSeqPos) prev_start) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:312:28: note: place parentheses around the '&&' expression to silence this warning 312 | !plus && start_plus_len < (TSeqPos) prev_start) { | ^ | ( ) In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: '&&' within '||' [-Wlogical-op-parentheses] 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { | ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: note: place parentheses around the '&&' expression to silence this warning 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { | ^ | ( ) /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: '&&' within '||' [-Wlogical-op-parentheses] 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { | ~~ ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: note: place parentheses around the '&&' expression to silence this warning 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { | ^ | ( ) In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_container.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_container.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_container.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_container.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_container.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/aln_container.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_container.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -C demo all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/local/bin/gmake -C cddalignview all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cddalignview' /usr/local/bin/gmake -C test all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/test' /usr/local/bin/gmake -C manip all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/manip' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/manip' /usr/local/bin/gmake -C eutils all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/linkout/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/linkout/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/linkout/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT linkout/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout/Makefile /usr/local/bin/gmake -C egquery all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --dtd egquery all File egquery.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m egquery.dtd -M "" -oA \ -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery TMPL=egquery all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/egquery/EGQueryResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libegquery.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libegquery.a /bin/ln -f .egquery.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.egquery.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/egquery' /usr/local/bin/gmake -C elink all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --dtd elink all File elink.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m elink.dtd -M "" -oA \ -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink TMPL=elink export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink TMPL=elink flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink TMPL=elink all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/elink__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/ELinkResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/elink/ELinkResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/elink/ELinkResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/elink__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/ELinkResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/elink/ELinkResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/elink/ELinkResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/elink__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/ELinkResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/elink/ELinkResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/elink/ELinkResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/elink___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/elink___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/elink___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/elink__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/elink___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libelink.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libelink.a /bin/ln -f .elink.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.elink.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/elink' /usr/local/bin/gmake -C epost all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --dtd epost all File epost.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m epost.dtd -M "" -oA \ -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost TMPL=epost export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost TMPL=epost flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost TMPL=epost all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/epost__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/EPostResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/epost/EPostResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/epost/EPostResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/epost__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/EPostResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/epost/EPostResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/epost/EPostResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/epost__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/EPostResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/epost/EPostResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/epost/EPostResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/epost___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/EPostResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/epost___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/EPostResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/epost___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/EPostResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/epost__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/epost___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libepost.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libepost.a /bin/ln -f .epost.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.epost.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/epost' /usr/local/bin/gmake -C esearch all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --dtd esearch all File esearch.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m esearch.dtd -M "" -oA \ -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch TMPL=esearch all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/ESearchResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esearch/ESearchResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esearch/ESearchResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/ESearchResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esearch/ESearchResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esearch/ESearchResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/ESearchResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esearch/ESearchResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esearch/ESearchResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libesearch.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libesearch.a /bin/ln -f .esearch.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.esearch.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esearch' /usr/local/bin/gmake -C espell all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --dtd espell all File espell.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m espell.dtd -M "" -oA \ -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell TMPL=espell export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell TMPL=espell flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell TMPL=espell all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/espell__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/ESpellResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/espell/ESpellResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/espell/ESpellResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/espell__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/ESpellResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/espell/ESpellResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/espell/ESpellResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/espell__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/ESpellResult.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/espell/ESpellResult.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/espell/ESpellResult_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/espell___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/espell___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/espell___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/espell__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/espell___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libespell.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libespell.a /bin/ln -f .espell.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.espell.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/espell' /usr/local/bin/gmake -C esummary all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --dtd esummary all File esummary.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m esummary.dtd -M "" -oA \ -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary TMPL=esummary all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/DocSum.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esummary/DocSum.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esummary/Item.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esummary/Item_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/DocSum.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esummary/DocSum.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esummary/Item.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esummary/Item_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/DocSum.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esummary/DocSum.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esummary/Item.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/esummary/Item_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/DocSum_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/DocSum_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/DocSum_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libesummary.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libesummary.a /bin/ln -f .esummary.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.esummary.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/esummary' /usr/local/bin/gmake -C linkout all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/linkout' /usr/local/bin/gmake -C einfo all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --dtd einfo all File einfo.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m einfo.dtd -M "" -oA \ -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo TMPL=einfo all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/DbInfo.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/einfo/DbInfo.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/einfo/DbInfo_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/DbInfo.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/einfo/DbInfo.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/einfo/DbInfo_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/DbInfo.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/einfo/DbInfo.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/einfo/DbInfo_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libeinfo.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libeinfo.a /bin/ln -f .einfo.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.einfo.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/einfo' /usr/local/bin/gmake -C uilist all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --dtd uilist all File uilist.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m uilist.dtd -M "" -oA \ -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist TMPL=uilist all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/IdList.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/uilist/IdList.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/uilist/IdList_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/IdList.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/uilist/IdList.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/uilist/IdList_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/IdList.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/uilist/IdList.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/uilist/IdList_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/IdList_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/IdList_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/IdList_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libuilist.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libuilist.a /bin/ln -f .uilist.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.uilist.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/uilist' /usr/local/bin/gmake -C ehistory all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --dtd ehistory all File ehistory.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m ehistory.dtd -M "" -oA \ -oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory TMPL=ehistory all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/ehistory/EHistoryItem_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libehistory.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libehistory.a /bin/ln -f .ehistory.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.ehistory.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/ehistory' /usr/local/bin/gmake -C efetch all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test/Makefile cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/new_module.sh --xsd efetch all File efetch.module not found. Using defaults... /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++ \ -opm /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src -m efetch.xsd -M "" -oA \ -oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \ datatool: 2.23.2 gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch TMPL=efetch export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch TMPL=efetch flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch TMPL=efetch all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/Abs.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/efetch/Abs.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/efetch/Abs_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:282: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/PubmedArticle.cpp:489:81: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 489 | if (!affiliation.empty()) affiliations.emplace_back(move(affiliation)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/Abs.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/efetch/Abs.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/efetch/Abs_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/Abs.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/efetch/Abs.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/efetch/Abs_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/Abs_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/Abs_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp:2: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/Abs_.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialimpl.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch__.cpp -o efetch__.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o /bin/rm -f libefetch.a .libefetch.a.stamp ar cr libefetch.a efetch__.o efetch___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libefetch.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libefetch.a /bin/ln -f .efetch.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.efetch.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /usr/local/bin/gmake -C test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/efetch' /usr/local/bin/gmake -C api all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api TMPL=eutils export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api TMPL=eutils flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api TMPL=eutils all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/eutils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/eutils.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/eutils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/eutils.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/eutils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/eutils.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/efetch.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/efetch.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/efetch.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/efetch.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/efetch.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/efetch.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/einfo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/einfo.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/einfo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/einfo.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/einfo.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/einfo.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/esearch.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/esearch.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/esearch.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/esearch.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/esearch.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/esearch.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/egquery.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/egquery.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/egquery.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/egquery.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/egquery.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/egquery.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/epost.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/epost.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/epost.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/epost.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/epost.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/epost.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/elink.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/elink.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/elink.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/elink.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/elink.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/elink.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/esummary.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/esummary.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/esummary.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/esummary.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/esummary.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/esummary.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/espell.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/espell.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/espell.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/espell.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/espell.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/espell.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/ehistory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/ehistory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/ehistory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/ehistory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/ehistory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/ehistory.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/eutils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/efetch.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/einfo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/esearch.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/egquery.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/epost.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/elink.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/esummary.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/espell.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/ehistory.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe 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-DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/epost.cpp -o epost.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/elink.cpp -o elink.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/espell.cpp -o espell.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libeutils.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libeutils.a /bin/ln -f .eutils.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.eutils.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils/api' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/eutils' /usr/local/bin/gmake -C edit all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pubmed_fetch/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT pubmed_fetch/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pubmed_citmatch/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT pubmed_citmatch/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/test_remote_updater/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test_remote_updater/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit TMPL=edit export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit TMPL=edit flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit TMPL=edit all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2458:13: warning: 5 enumeration values not handled in switch: 'eSeqSubMap', 'eSeqRef', 'eSeqEnd'... [-Wswitch] 2458 | switch (seqmap_ci.GetType()) { | ^~~~~~~~~~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/promote.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/promote.cpp:224:34: warning: 'TranslateCdregion' is deprecated [-Wdeprecated-declarations] 224 | CCdregion_translate::TranslateCdregion(data, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:965:5: note: 'TranslateCdregion' has been explicitly marked deprecated here 965 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/promote.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/promote.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/field_handler.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/field_handler.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/field_handler.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/apply_object.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/apply_object.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/apply_object.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/string_constraint.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/string_constraint.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/string_constraint.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:44: warning: 'Find' is deprecated [-Wdeprecated-declarations] 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here 2023 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:40: warning: 'Find' is deprecated [-Wdeprecated-declarations] 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here 2023 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/dblink_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/dblink_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/dblink_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Dbtag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/text_desc_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/text_desc_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/text_desc_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gb_block_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gb_block_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gb_block_field.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/mail_report.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/mail_report.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/mail_report.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Object_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Object_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gaps_edit.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gaps_edit.cpp:148:17: warning: variable 'current' set but not used [-Wunused-but-set-variable] 148 | TSeqPos current = 0; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gaps_edit.cpp:396:75: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 396 | gap.SetSeq_data().SetGap().SetLinkage_evidence().emplace_back(move(pEvidence)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gaps_edit.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gaps_edit.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiutil.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/source_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/source_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/source_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/rna_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/rna_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/rna_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/taxon3.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/eutils_updater.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/edit/eutils_updater.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/eutils/api/eutils.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 1 warning generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/parse_text_options.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/edit/parse_text_options.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/parse_text_options.cpp:47:21: warning: 'Find' is deprecated [-Wdeprecated-declarations] 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:2023:5: note: 'Find' has been explicitly marked deprecated here 2023 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/parse_text_options.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/edit/parse_text_options.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/parse_text_options.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/edit/parse_text_options.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/publication_edit.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Name_std.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Name_std_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/publication_edit.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Name_std.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Name_std_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/publication_edit.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Name_std.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Name_std_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/external_annots.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/edit/external_annots.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/external_annots.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/edit/external_annots.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/external_annots.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/edit/external_annots.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: unused function 'GetTextObjectDescription' [-Wunused-function] 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) | ^~~~~~~~~~~~~~~~~~~~~~~~ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seq_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seq_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seq_edit.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pub_fix.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/ArticleId.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/ArticleId_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pub_fix.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/ArticleId.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/ArticleId_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pub_fix.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/ArticleId.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/biblio/ArticleId_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gene_utils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/eutils_updater.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seq_edit.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pub_fix.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/promote.cpp -o promote.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT 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/usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/unit_test' /usr/local/bin/gmake -C pubmed_fetch all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_fetch' /usr/local/bin/gmake -C pubmed_citmatch all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/pubmed_citmatch' /usr/local/bin/gmake -C test_remote_updater all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit/test_remote_updater' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/edit' /usr/local/bin/gmake -C cleanup all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup TMPL=cleanup export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup TMPL=cleanup flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup TMPL=cleanup all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:111:7: warning: private field 'm_Dummy' is not used [-Wunused-private-field] 111 | int m_Dummy; | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/cleanup/cleanup_message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/cleanup/cleanup_message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/cleanup/cleanup_message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/logging/message.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/influenza_set.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/influenza_set.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/influenza_set.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/influenza_set.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o influenza_set.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/local/bin/gmake -C format all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format/test/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format TMPL=xformat export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format TMPL=xformat flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format TMPL=xformat all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/accession_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/accession_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/accession_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/basecount_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/basecount_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/basecount_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/comment_item.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/comment_item.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/comment_item.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/contig_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/contig_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/contig_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/date_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/date_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/date_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/defline_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/defline_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/defline_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/feature_item.cpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/feature_item.cpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/feature_item.cpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genome_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genome_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genome_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/keywords_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/keywords_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/keywords_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/locus_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/locus_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/locus_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/primary_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/primary_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/primary_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/reference_item.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/reference_item.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/reference_item.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/segment_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/segment_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/segment_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/sequence_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/sequence_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/sequence_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/source_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/source_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/source_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/version_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/version_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/version_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/wgs_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/wgs_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/wgs_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/tsa_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/tsa_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/tsa_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Int_fuzz.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/qualifiers.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] 1105 | bool bHtml = ctx.Config().DoHTML(); | ^~~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/qualifiers.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/qualifiers.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/context.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/context.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/context.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gather_items.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gather_items.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gather_items.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gather_items.cpp:969:13: warning: unused function 's_NsAreGaps' [-Wunused-function] 969 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) | ^~~~~~~~~~~ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/embl_gather.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/embl_gather.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/embl_gather.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/item_formatter.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/item_formatter.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/item_formatter.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genbank_formatter.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genbank_formatter.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genbank_formatter.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genbank_formatter.cpp:285:15: warning: unused function 's_get_anchor_html' [-Wunused-function] 285 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) | ^~~~~~~~~~~~~~~~~ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/format_item_ostream.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/format_item_ostream.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/format_item_ostream.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/item_ostream.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/item_ostream.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/item_ostream.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/origin_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/origin_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/origin_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_config.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/flat_file_config.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_config.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/flat_file_config.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_config.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/flat_file_config.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_html.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/flat_file_config.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_html.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/flat_file_config.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_html.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/flat_file_config.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/alignment_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/alignment_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/alignment_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gap_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gap_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gap_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gather_iter.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/gather_iter.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gather_iter.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/gather_iter.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gather_iter.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/gather_iter.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/item_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/item_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/item_base.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/inst_info_map.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/inst_info_map.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/inst_info_map.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/inst_info_map.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/inst_info_map.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/inst_info_map.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gene_finder.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gene_finder.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gene_finder.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/scope.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/accession_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency 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dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_html.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_qual_slots.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread 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/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_file_html.cpp -o flat_file_html.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o flat_file_html.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/format' /usr/local/bin/gmake -C huge_asn all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/huge_asn' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/huge_asn' /usr/local/bin/gmake -C validator all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/validator' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/validator' /usr/local/bin/gmake -C asniotest all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/asniotest' /usr/local/bin/gmake -C align all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align' /usr/local/bin/gmake -C seqmasks_io all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_cmdline_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_cmdline_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_cmdline_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Bioseq.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Bioseq_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/local/bin/gmake -C align_format all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format TMPL=align_format export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format TMPL=align_format flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format TMPL=align_format all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/format_flags.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/format_flags.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/format_flags.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/format_flags.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/format_flags.cpp:30: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/format_flags.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/align_format_util.cpp:1573:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] 1573 | int count = 0; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/align_format_util.cpp:2450:68: warning: bitwise or with non-zero value always evaluates to true [-Wtautological-bitwise-compare] 2450 | if(linkoutWithoutVersion && (linkoutWithoutVersion | eStructure)) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showdefline.cpp:1239:16: warning: variable 'line_length' set but not used [-Wunused-but-set-variable] 1239 | size_t line_length = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showalign.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showalign.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showalign.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/tabular.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/tabular.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/tabular.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:448:35: warning: unused variable 'da' [-Wunused-variable] 448 | const CSeq_align& da = *x_OrigAlignsById[*di]; | ^~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/html/html.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/format_flags.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/aln_printer.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/align_format' /usr/local/bin/gmake -C snputil all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/snputil' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/snputil' /usr/local/bin/gmake -C uudutil all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/uudutil' /usr/local/bin/gmake -C variation all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/variation' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/variation' /usr/local/bin/gmake -C writers all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/writers' /usr/local/bin/gmake -C import all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/import' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/import' /usr/local/bin/gmake -C flatfile all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools/flatfile' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/objtools' /usr/local/bin/gmake -C ctools all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/ctools' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/ctools' /usr/local/bin/gmake -C sra all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra' NOTE: Skipping project sra due to unmet requirements: VDB gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra' /usr/local/bin/gmake -C readers mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers' /usr/local/bin/gmake -C sra mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/sra/readers/sra TMPL=sraread mark-as-disabled gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/sra/readers/sra TMPL=srareadx mark-as-disabled gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/sra' /usr/local/bin/gmake -C bam mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/bam' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/sra/readers/bam TMPL=bamread mark-as-disabled gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/bam' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers/bam' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/readers' /usr/local/bin/gmake -C data_loaders mark-as-disabled_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders' /usr/local/bin/gmake -C sra mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' NOTE: skipping project "ncbi_xloader_sra" due to unmet requirements gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /usr/local/bin/gmake -C test mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/sra' /usr/local/bin/gmake -C bam mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' NOTE: skipping project "ncbi_xloader_bam" due to unmet requirements gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /usr/local/bin/gmake -C test mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/bam' /usr/local/bin/gmake -C csra mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' NOTE: skipping project "ncbi_xloader_csra" due to unmet requirements gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /usr/local/bin/gmake -C test mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/csra' /usr/local/bin/gmake -C wgs mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' NOTE: skipping project "ncbi_xloader_wgs" due to unmet requirements gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/wgs' /usr/local/bin/gmake -C vdbgraph mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' NOTE: skipping project "ncbi_xloader_vdbgraph" due to unmet requirements gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /usr/local/bin/gmake -C test mark-as-disabled_r || exit 5 gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/vdbgraph' /usr/local/bin/gmake -C snp mark-as-disabled_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/VDB.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' NOTE: skipping project "ncbi_xloader_snp" due to unmet requirements gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders/snp' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra/data_loaders' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sra' /usr/local/bin/gmake -C algo all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/sequence/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/sequence/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT sequence/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/sequence/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/align/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/align/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT align/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/align/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/structure/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/structure/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT structure/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/structure/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/gnomon/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/gnomon/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT gnomon/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/tree/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/tree/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT tree/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/tree/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/phy_tree/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/phy_tree/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/seqqa/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/seqqa/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT seqqa/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/seqqa/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/cobalt/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/cobalt/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/text/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/text/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT text/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/text/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/volume_merge/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/volume_merge/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT volume_merge/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/primer/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/primer/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT primer/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/primer/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/id_mapper/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/id_mapper/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /usr/local/bin/gmake -C dustmask all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/dustmask/symdust.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/dustmask/symdust.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/dustmask/symdust.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/dustmask/symdust.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/dustmask/symdust.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/dustmask/symdust.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/dustmask/symdust.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/dustmask' /usr/local/bin/gmake -C winmask all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask TMPL=xalgowinmask export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask TMPL=xalgowinmask flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask TMPL=xalgowinmask all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_util.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_util.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_util.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:34: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:113:10: warning: private field 'ambig' is not used [-Wunused-private-field] 113 | bool ambig; | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_factory.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_factory.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_factory.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat.hpp:37: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat.hpp:37: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat.hpp:37: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp:35: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp:35: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp:35: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat_factory.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat_factory.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat_factory.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:35: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp:35: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp:35: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp:35: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:35: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:35: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:35: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:35: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:34: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:34: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:34: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:36: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:36: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:36: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_util.cpp:35: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_util.cpp:130:31: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] 130 | string id_str = sequence::GetTitle( bsh ); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here 289 | NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_util.cpp:35: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_util.cpp:35: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe 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-D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o 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-I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/winmask' /usr/local/bin/gmake -C sequence all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/sequence' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/sequence' /usr/local/bin/gmake -C blast all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT dbindex_search/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT blast_sra_input/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /usr/local/bin/gmake -C composition_adjustment all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment all /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: function 's_CompoHeapIsValid' is not needed and will not be emitted [-Wunneeded-internal-declaration] 137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) | ^~~~~~~~~~~~~~~~~~ 1 warning generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c:178:12: warning: variable 'corr_factor' set but not used [-Wunused-but-set-variable] 178 | double corr_factor = 0.0; /* correlation between how p_query | ^ 1 warning generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: unused function 's_AlignmentsAreSorted' [-Wunused-function] 185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) | ^~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: unused function 's_DistinctAlignmentsLength' [-Wunused-function] 200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/local/bin/gmake -C core all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core TMPL=blast export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core TMPL=blast flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core TMPL=blast all /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_kappa.c:3003:27: warning: unused variable 'forbidden' [-Wunused-variable] 3003 | Blast_ForbiddenRanges forbidden = {0,}; | ^~~~~~~~~ 1 warning generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_options.c:1330:13: warning: unused variable 'bytes_written' [-Wunused-variable] 1330 | int bytes_written = snprintf(buffer, DIM(buffer), | ^~~~~~~~~~~~~ 1 warning generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] 1095 | int rv = _PSIPurgeAlignedRegion(msa, seq_index, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] 1727 | double sum = 0.0; | ^ 2 warnings generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] 1169 | double check; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] 1362 | long lineno = 0; | ^ 2 warnings generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] 1730 | Int4 totalCnt = 0; | ^ 1 warning generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_util.c:309:2: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 309 | return 0; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_util.c:306:5: note: previous statement is here 306 | else if (strcasecmp("mapper", program) == 0) | ^ 1 warning generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] 4154 | Int4 num_extensions = 0; | ^ 1 warning generated. /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] 2640 | Int4 trim_by; | ^ 1 warning generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/aa_ungapped.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_aascan.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_nalookup.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_nascan.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_message.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_options.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_psi.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/na_ungapped.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_psi_priv.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_seg.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_seqsrc.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_setup.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_stat.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_traceback.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_util.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/gapinfo.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/greedy_align.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/hspfilter_collector.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/hspfilter_besthit.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/hspfilter_culling.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/link_hsps.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/lookup_util.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/lookup_wrap.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/matrix_freq_ratios.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/ncbi_std.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/ncbi_math.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_encoding.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/pattern.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/phi_extend.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/phi_gapalign.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/phi_lookup.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_parameters.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_posit.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_program.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_query_info.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_tune.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_sw.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_dynarray.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/spliced_hits.c. /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/core' /usr/local/bin/gmake -C dbindex all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/fasta.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 52 | objects::CFastaReader::fAllSeqIds; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/fasta.hpp:93:20: note: 'fAllSeqIds' has been explicitly marked deprecated here 93 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:183:40: note: expanded from macro 'NCBI_STD_DEPRECATED' 183 | # define NCBI_STD_DEPRECATED(message) NCBI_STD_DEPRECATED_1(message) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:177:44: note: expanded from macro 'NCBI_STD_DEPRECATED_1' 177 | # define NCBI_STD_DEPRECATED_1(message) [[deprecated(message)]] | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/fasta.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/fasta.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:34: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:34: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:34: In file included from /usr/include/c++/v1/algorithm:1810: In file included from /usr/include/c++/v1/__algorithm/for_each.h:16: In file included from /usr/include/c++/v1/__ranges/movable_box.h:23: In file included from /usr/include/c++/v1/optional:1293: In file included from /usr/include/c++/v1/iterator:683: In file included from /usr/include/c++/v1/__iterator/common_iterator.h:31: In file included from /usr/include/c++/v1/variant:253: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:35: In file included from /usr/include/c++/v1/iostream:43: In file included from /usr/include/c++/v1/ios:221: In file included from /usr/include/c++/v1/__fwd/ios.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] 306 | unsigned long tmp; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:35: In file included from /usr/include/c++/v1/iostream:43: In file included from /usr/include/c++/v1/ios:221: In file included from /usr/include/c++/v1/__fwd/ios.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:35: In file included from /usr/include/c++/v1/iostream:43: In file included from /usr/include/c++/v1/ios:221: In file included from /usr/include/c++/v1/__fwd/ios.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:35: In file included from /usr/include/c++/v1/iostream:43: In file included from /usr/include/c++/v1/ios:221: In file included from /usr/include/c++/v1/__fwd/ios.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:39: warning: 'GetTitle' is deprecated [-Wdeprecated-declarations] 658 | string idstr = objects::sequence::GetTitle( bsh ); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:289:1: note: 'GetTitle' has been explicitly marked deprecated here 289 | NCBI_DEPRECATED NCBI_XOBJUTIL_EXPORT | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:35: In file included from /usr/include/c++/v1/iostream:43: In file included from /usr/include/c++/v1/ios:221: In file included from /usr/include/c++/v1/__fwd/ios.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:35: In file included from /usr/include/c++/v1/iostream:43: In file included from /usr/include/c++/v1/ios:221: In file included from /usr/include/c++/v1/__fwd/ios.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:35: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:35: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:35: In file included from /usr/include/c++/v1/list:223: In file included from /usr/include/c++/v1/__memory_resource/polymorphic_allocator.h:20: In file included from /usr/include/c++/v1/tuple:1456: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp:783:23: warning: private field 'word_size_' is not used [-Wunused-private-field] 783 | unsigned long word_size_; /**< Target word size. */ | ^ 4 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -C makeindex all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex flag-stamps gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:36: In file included from /usr/include/c++/v1/string:580: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O main.o mkindex_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lsqlite3 -llmdb -pthread -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o makembindex strip makembindex /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/local/bin/gmake -C dbindex_search all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /usr/local/bin/gmake -C api all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api TMPL=xblast export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api TMPL=xblast flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api TMPL=xblast all In file included from .core_blast_kappa.c:1: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3003:27: warning: unused variable 'forbidden' [-Wunused-variable] 3003 | Blast_ForbiddenRanges forbidden = {0,}; | ^~~~~~~~~ 1 warning generated. In file included from .core_blast_options.c:1: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_options.c:1330:13: warning: unused variable 'bytes_written' [-Wunused-variable] 1330 | int bytes_written = snprintf(buffer, DIM(buffer), | ^~~~~~~~~~~~~ 1 warning generated. In file included from .core_blast_psi_priv.c:1: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1095:25: warning: variable 'rv' set but not used [-Wunused-but-set-variable] 1095 | int rv = _PSIPurgeAlignedRegion(msa, seq_index, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c:1727:20: warning: variable 'sum' set but not used [-Wunused-but-set-variable] 1727 | double sum = 0.0; | ^ 2 warnings generated. In file included from .core_blast_stat.c:1: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_stat.c:1169:12: warning: variable 'check' set but not used [-Wunused-but-set-variable] 1169 | double check; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_stat.c:1362:10: warning: variable 'lineno' set but not used [-Wunused-but-set-variable] 1362 | long lineno = 0; | ^ 2 warnings generated. In file included from .core_blast_traceback.c:1: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1730:14: warning: variable 'totalCnt' set but not used [-Wunused-but-set-variable] 1730 | Int4 totalCnt = 0; | ^ 1 warning generated. In file included from .core_blast_util.c:1: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_util.c:309:2: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 309 | return 0; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_util.c:306:5: note: previous statement is here 306 | else if (strcasecmp("mapper", program) == 0) | ^ 1 warning generated. In file included from .core_jumper.c:1: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/jumper.c:4154:10: warning: variable 'num_extensions' set but not used [-Wunused-but-set-variable] 4154 | Int4 num_extensions = 0; | ^ 1 warning generated. In file included from .core_hspfilter_mapper.c:1: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c:2640:22: warning: variable 'trim_by' set but not used [-Wunused-but-set-variable] 2640 | Int4 trim_by; | ^ 1 warning generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_misc.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_misc.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/util_misc.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:530:17: warning: variable 'subject_pos' set but not used [-Wunused-but-set-variable] 530 | int subject_pos = hh->hsp->subject.offset; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:462:9: warning: variable 'num_hsps' set but not used [-Wunused-but-set-variable] 462 | int num_hsps = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:20: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] 100 | return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:13: warning: 'SetFilterString' is deprecated [-Wdeprecated-declarations] 106 | m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:180:5: note: 'SetFilterString' has been explicitly marked deprecated here 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiexpt.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/local_blast.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_blast.cpp:1660:7: warning: ignoring return value of function declared with 'nodiscard' attribute [-Wunused-result] 1660 | m_Errs.empty(); | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_blast.cpp:1933:10: warning: variable 'rv' set but not used [-Wunused-but-set-variable] 1933 | Int2 rv = BlastProgram2Number(program.c_str(), &retval); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_blast.cpp:2505:10: warning: variable 'l_total_bytes' set but not used [-Wunused-but-set-variable] 2505 | int l_total_bytes=0, n_read; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 6 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/bl2seq.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/bl2seq.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/bl2seq.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimtx.hpp:62: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbithr_conf.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:35: In file included from /usr/include/c++/v1/iomanip:47: In file included from /usr/include/c++/v1/istream:163: In file included from /usr/include/c++/v1/__fwd/istream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:35: In file included from /usr/include/c++/v1/iomanip:47: In file included from /usr/include/c++/v1/istream:163: In file included from /usr/include/c++/v1/__fwd/istream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:35: In file included from /usr/include/c++/v1/iomanip:47: In file included from /usr/include/c++/v1/istream:163: In file included from /usr/include/c++/v1/__fwd/istream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:16: warning: 'Read' is deprecated [-Wdeprecated-declarations] 125 | reader.Read(false, true); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/readers/aln_reader.hpp:214:5: note: 'Read' has been explicitly marked deprecated here 214 | NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/version.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/version.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version_api.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/version.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/version.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version_api.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/version.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/version.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/version_api.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rps_aux.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rps_aux.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rps_aux.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/search_strategy.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/search_strategy.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/search_strategy.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_types.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_search.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/Pssm.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_search.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/Pssm.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_search.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/Pssm.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_results.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/query_data.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/query_data.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/query_data.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:144:17: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] 144 | TSeqPos nconv = static_cast(CSeqConvert::Convert(m_SequenceData, m_Encoding, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:203:13: warning: variable 'nconv' set but not used [-Wunused-but-set-variable] 203 | TSeqPos nconv = static_cast(CSeqManip::ReverseComplement(m_SequenceData, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp:34: In file included from /usr/include/c++/v1/sstream:276: In file included from /usr/include/c++/v1/__fwd/sstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_blk.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_blk.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_blk.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/subj_ranges_set.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/subj_ranges_set.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/subj_ranges_set.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/seedtop.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/seedtop.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/seedtop.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:821:9: warning: variable 'db_seq_length' set but not used [-Wunused-but-set-variable] 821 | int db_seq_length = db_seq_offsets[db_oid + 1] - db_seq_offsets[db_oid]; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/psiblast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/magicblast.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/magicblast.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/magicblast.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/general/User_object_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_node.cpp:38: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_node.hpp:121:6: warning: private field 'm_QueryIndex' is not used [-Wunused-private-field] 121 | int m_QueryIndex; | ^ 4 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_aa_ungapped.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c Updating dependency information for .core_blast_diagnostics.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c Updating dependency information for .core_blast_engine.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c Updating dependency information for .core_blast_extend.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c Updating dependency information for .core_blast_filter.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c Updating dependency information for .core_blast_gapalign.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c Updating dependency information for .core_blast_hits.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c Updating dependency information for .core_blast_hspstream.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c Updating dependency information for .core_blast_itree.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c Updating dependency information for .core_blast_kappa.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c Updating dependency information for .core_blast_lookup.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c Updating dependency information for .core_blast_aalookup.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c Updating dependency information for .core_blast_aascan.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c Updating dependency information for .core_blast_nalookup.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c Updating dependency information for .core_blast_nascan.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c Updating dependency information for .core_blast_message.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c Updating dependency information for .core_blast_options.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c Updating dependency information for .core_blast_psi.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c Updating dependency information for .core_na_ungapped.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c Updating dependency information for .core_blast_psi_priv.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c Updating dependency information for .core_blast_seg.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c Updating dependency information for .core_blast_seqsrc.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c Updating dependency information for .core_blast_setup.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c Updating dependency information for .core_blast_stat.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c Updating dependency information for .core_blast_traceback.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c Updating dependency information for .core_blast_util.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c Updating dependency information for .core_gapinfo.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c Updating dependency information for .core_greedy_align.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c Updating dependency information for .core_hspfilter_collector.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c Updating dependency information for .core_hspfilter_besthit.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c Updating dependency information for .core_hspfilter_culling.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c Updating dependency information for .core_link_hsps.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c Updating dependency information for .core_lookup_util.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c Updating dependency information for .core_lookup_wrap.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c Updating dependency information for .core_matrix_freq_ratios.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c Updating dependency information for .core_ncbi_std.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c Updating dependency information for .core_ncbi_math.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c Updating dependency information for .core_blast_encoding.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c Updating dependency information for .core_pattern.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c Updating dependency information for .core_phi_extend.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c Updating dependency information for .core_phi_gapalign.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c Updating dependency information for .core_phi_lookup.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c Updating dependency information for .core_blast_parameters.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c Updating dependency information for .core_blast_posit.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c Updating dependency information for .core_blast_program.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c Updating dependency information for .core_blast_query_info.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c Updating dependency information for .core_blast_tune.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c Updating dependency information for .core_blast_sw.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c Updating dependency information for .core_blast_dynarray.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c Updating dependency information for .core_split_query.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c Updating dependency information for .core_gencode_singleton.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c Updating dependency information for .core_index_ungapped.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c Updating dependency information for .core_blast_traceback_mt_priv.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c Updating dependency information for .core_blast_hspstream_mt_utils.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c Updating dependency information for .core_boost_erf.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c Updating dependency information for .core_jumper.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c Updating dependency information for .core_hspfilter_mapper.c. echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for .core_spliced_hits.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_node.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp. rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_ncbi_math.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_aa_ungapped.c -o .core_aa_ungapped.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_diagnostics.c -o .core_blast_diagnostics.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_engine.c -o .core_blast_engine.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_extend.c -o .core_blast_extend.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_filter.c -o .core_blast_filter.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_gapalign.c -o .core_blast_gapalign.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_hits.c -o .core_blast_hits.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_hspstream.c -o .core_blast_hspstream.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_itree.c -o .core_blast_itree.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_kappa.c -o .core_blast_kappa.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_lookup.c -o .core_blast_lookup.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_aalookup.c -o .core_blast_aalookup.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_aascan.c -o .core_blast_aascan.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_nalookup.c -o .core_blast_nalookup.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_nascan.c -o .core_blast_nascan.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_message.c -o .core_blast_message.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_options.c -o .core_blast_options.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_psi.c -o .core_blast_psi.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_na_ungapped.c -o .core_na_ungapped.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_psi_priv.c -o .core_blast_psi_priv.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_seg.c -o .core_blast_seg.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_seqsrc.c -o .core_blast_seqsrc.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_setup.c -o .core_blast_setup.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_stat.c -o .core_blast_stat.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_traceback.c -o .core_blast_traceback.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_util.c -o .core_blast_util.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_gapinfo.c -o .core_gapinfo.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_greedy_align.c -o .core_greedy_align.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_hspfilter_collector.c -o .core_hspfilter_collector.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_hspfilter_culling.c -o .core_hspfilter_culling.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_link_hsps.c -o .core_link_hsps.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_lookup_util.c -o .core_lookup_util.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_lookup_wrap.c -o .core_lookup_wrap.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_ncbi_std.c -o .core_ncbi_std.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_ncbi_math.c -o .core_ncbi_math.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_encoding.c -o .core_blast_encoding.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_pattern.c -o .core_pattern.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_phi_extend.c -o .core_phi_extend.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_phi_gapalign.c -o .core_phi_gapalign.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_phi_lookup.c -o .core_phi_lookup.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_parameters.c -o .core_blast_parameters.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_posit.c -o .core_blast_posit.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_program.c -o .core_blast_program.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_query_info.c -o .core_blast_query_info.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_tune.c -o .core_blast_tune.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_sw.c -o .core_blast_sw.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_dynarray.c -o .core_blast_dynarray.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_split_query.c -o .core_split_query.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_gencode_singleton.c -o .core_gencode_singleton.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_index_ungapped.c -o .core_index_ungapped.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_boost_erf.c -o .core_boost_erf.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_jumper.c -o .core_jumper.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o echo '#include "/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /usr/local/bin/ccache /usr/local/libexec/ccache/cc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de .core_spliced_hits.c -o .core_spliced_hits.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include 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/usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 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/usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include 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/usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protectIn file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. or-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xblast.dep rm .core_blast_dynarray.c .core_boost_erf.c .core_blast_itree.c .core_index_ungapped.c .core_blast_engine.c .core_lookup_wrap.c .core_hspfilter_besthit.c .core_gapinfo.c .core_blast_hspstream_mt_utils.c .core_blast_diagnostics.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_util.c .core_blast_posit.c .core_hspfilter_mapper.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_blast_stat.c .core_blast_setup.c .core_greedy_align.c .core_blast_parameters.c .core_blast_aascan.c .core_phi_lookup.c .core_split_query.c .core_blast_sw.c .core_blast_extend.c .core_ncbi_math.c .core_blast_seqsrc.c .core_blast_filter.c .core_gencode_singleton.c .core_spliced_hits.c .core_blast_psi.c .core_blast_lookup.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_encoding.c .core_blast_psi_priv.c .core_jumper.c .core_blast_aalookup.c .core_blast_traceback.c .core_link_hsps.c .core_pattern.c .core_lookup_util.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_query_info.c .core_blast_gapalign.c .core_blast_seg.c .core_blast_tune.c .core_blast_options.c .core_phi_gapalign.c gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/api' /usr/local/bin/gmake -C proteinkmer all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:652:6: warning: variable 'hashCount' set but not used [-Wunused-but-set-variable] 652 | int hashCount=0; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:737:6: warning: variable 'lsh_hits' set but not used [-Wunused-but-set-variable] 737 | int lsh_hits=0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/blastkmeroptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/blastkmeroptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/blastkmeroptions.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbifile.hpp:53: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/pearson.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/pearson.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/pearson.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/local/bin/gmake -C format all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format TMPL=xblastformat export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format TMPL=xblastformat flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format TMPL=xblastformat all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:53: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] 501 | unique_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' 1209 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:52: warning: 'CObjectOStreamXml' is deprecated [-Wdeprecated-declarations] 785 | unique_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objostrxml.hpp:66:5: note: 'CObjectOStreamXml' has been explicitly marked deprecated here 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbimisc.hpp:1209:43: note: expanded from macro 'NCBI_DEPRECATED_CTOR' 1209 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_format.cpp:49: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_format.cpp:51: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:23: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:24: warning: 'GetFilterString' is deprecated [-Wdeprecated-declarations] 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:5: note: 'GetFilterString' has been explicitly marked deprecated here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/build_archive.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/build_archive.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/build_archive.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/sam.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/sam.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/sam_formatter.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/sam.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/sam.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/sam_formatter.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/sam.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/sam.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/format/sam_formatter.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_async_format.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/format' /usr/local/bin/gmake -C blastinput all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/serialbase.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/iterator.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:83:10: warning: 'LoadSeq_idSeq_ids' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 83 | bool LoadSeq_idSeq_ids(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:105:18: note: overridden virtual function is here 105 | virtual bool LoadSeq_idSeq_ids(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:85:10: warning: 'LoadSeq_idGi' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 85 | bool LoadSeq_idGi(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:107:18: note: overridden virtual function is here 107 | virtual bool LoadSeq_idGi(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:87:10: warning: 'LoadSeq_idAccVer' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 87 | bool LoadSeq_idAccVer(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:109:18: note: overridden virtual function is here 109 | virtual bool LoadSeq_idAccVer(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:89:10: warning: 'LoadSeq_idLabel' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 89 | bool LoadSeq_idLabel(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:111:18: note: overridden virtual function is here 111 | virtual bool LoadSeq_idLabel(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:91:10: warning: 'LoadSeq_idTaxId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 91 | bool LoadSeq_idTaxId(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:113:18: note: overridden virtual function is here 113 | virtual bool LoadSeq_idTaxId(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:93:10: warning: 'LoadSequenceHash' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 93 | bool LoadSequenceHash(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:115:18: note: overridden virtual function is here 115 | virtual bool LoadSequenceHash(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:95:10: warning: 'LoadSequenceLength' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 95 | bool LoadSequenceLength(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:117:18: note: overridden virtual function is here 117 | virtual bool LoadSequenceLength(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:97:10: warning: 'LoadSequenceType' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 97 | bool LoadSequenceType(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:119:18: note: overridden virtual function is here 119 | virtual bool LoadSequenceType(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:99:10: warning: 'LoadSeq_idBlob_ids' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 99 | bool LoadSeq_idBlob_ids(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:102:18: note: overridden virtual function is here 102 | virtual bool LoadSeq_idBlob_ids(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:103:10: warning: 'LoadAccVers' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 103 | bool LoadAccVers(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:133:18: note: overridden virtual function is here 133 | virtual bool LoadAccVers(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:105:10: warning: 'LoadGis' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 105 | bool LoadGis(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:135:18: note: overridden virtual function is here 135 | virtual bool LoadGis(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:107:10: warning: 'LoadLabels' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 107 | bool LoadLabels(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:137:18: note: overridden virtual function is here 137 | virtual bool LoadLabels(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:109:10: warning: 'LoadTaxIds' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 109 | bool LoadTaxIds(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:139:18: note: overridden virtual function is here 139 | virtual bool LoadTaxIds(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:111:10: warning: 'LoadHashes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 111 | bool LoadHashes(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:141:18: note: overridden virtual function is here 141 | virtual bool LoadHashes(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:114:10: warning: 'LoadLengths' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 114 | bool LoadLengths(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:144:18: note: overridden virtual function is here 144 | virtual bool LoadLengths(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:116:10: warning: 'LoadTypes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 116 | bool LoadTypes(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:146:18: note: overridden virtual function is here 146 | virtual bool LoadTypes(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:118:10: warning: 'LoadStates' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 118 | bool LoadStates(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:148:18: note: overridden virtual function is here 148 | virtual bool LoadStates(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:121:10: warning: 'LoadBlobState' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 121 | bool LoadBlobState(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:151:18: note: overridden virtual function is here 151 | virtual bool LoadBlobState(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:123:10: warning: 'LoadBlobVersion' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 123 | bool LoadBlobVersion(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:153:18: note: overridden virtual function is here 153 | virtual bool LoadBlobVersion(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:126:10: warning: 'LoadBlobs' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 126 | bool LoadBlobs(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:156:18: note: overridden virtual function is here 156 | virtual bool LoadBlobs(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:130:10: warning: 'LoadBlobs' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 130 | bool LoadBlobs(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:160:18: note: overridden virtual function is here 160 | virtual bool LoadBlobs(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:134:10: warning: 'LoadBlob' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 134 | bool LoadBlob(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:164:18: note: overridden virtual function is here 164 | virtual bool LoadBlob(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:136:10: warning: 'LoadChunk' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 136 | bool LoadChunk(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:168:18: note: overridden virtual function is here 168 | virtual bool LoadChunk(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:138:10: warning: 'LoadChunks' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 138 | bool LoadChunks(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:170:18: note: overridden virtual function is here 170 | virtual bool LoadChunks(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:141:10: warning: 'LoadBlobSet' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 141 | bool LoadBlobSet(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:173:18: note: overridden virtual function is here 173 | virtual bool LoadBlobSet(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 28 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbitime.hpp:65: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/cmdline_flags.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/cmdline_flags.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/cmdline_flags.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] 67 | const bool kFilterByDefault = false; | ^~~~~~~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:48: warning: 'GetCpuCount' is deprecated [-Wdeprecated-declarations] 205 | const int kMaxValue = static_cast(GetCpuCount()); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_system.hpp:478:8: note: 'GetCpuCount' has been explicitly marked deprecated here 478 | inline NCBI_DEPRECATED | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:190:27: note: expanded from macro 'NCBI_DEPRECATED' 190 | # define NCBI_DEPRECATED NCBI_LEGACY_DEPRECATED_0 | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/common/ncbiconf_impl.h:165:56: note: expanded from macro 'NCBI_LEGACY_DEPRECATED_0' 165 | # define NCBI_LEGACY_DEPRECATED_0 __attribute__((deprecated)) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/util/sequence.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.blastinput.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -C unit_test all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /usr/local/bin/gmake -C demo all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/local/bin/gmake -C blast_sra_input all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /usr/local/bin/gmake -C igblast all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/igblast TMPL=igblast export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/igblast TMPL=igblast flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/igblast TMPL=igblast all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/igblast/igblast.cpp:199:17: warning: variable 'count' set but not used [-Wunused-but-set-variable] 199 | int count = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/query_data.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 4 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/igblast/igblast.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.igblast.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/local/bin/gmake -C gumbel_params all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /usr/local/bin/gmake -C vdb all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/vdb' NOTE: Skipping project vdb due to unmet requirements: VDB gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/vdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/vdb TMPL=vdb2blast mark-as-disabled gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/vdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/vdb' /usr/local/bin/gmake -C unit_tests all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' /usr/local/bin/gmake -C blast_format all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /usr/local/bin/gmake -C blastdb all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /usr/local/bin/gmake -C seqdb_reader all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /usr/local/bin/gmake -C api all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util mark-as-disabled gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util mark-as-disabled gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/blast' /usr/local/bin/gmake -C segmask all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/segmask TMPL=xalgosegmask export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/segmask TMPL=xalgosegmask flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/segmask TMPL=xalgosegmask all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/segmask/segmask.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/segmask/segmask.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/segmask/segmask.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/segmask/segmask.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/segmask/segmask.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/segmask/segmask.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/seq_vector.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/bioseq_handle.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/segmask/segmask.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/segmask' /usr/local/bin/gmake -C align all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/align' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/align' /usr/local/bin/gmake -C structure all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/structure' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/structure' /usr/local/bin/gmake -C gnomon all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/gnomon' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/gnomon' /usr/local/bin/gmake -C tree all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/tree' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/tree' /usr/local/bin/gmake -C phy_tree all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/phy_tree' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/phy_tree' /usr/local/bin/gmake -C seqqa all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/seqqa' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/seqqa' /usr/local/bin/gmake -C cobalt all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/cobalt' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/cobalt' /usr/local/bin/gmake -C text all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/text' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/text' /usr/local/bin/gmake -C volume_merge all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/volume_merge' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/volume_merge' /usr/local/bin/gmake -C primer all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/primer' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/primer' /usr/local/bin/gmake -C id_mapper all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/algo' /usr/local/bin/gmake -C misc all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/clog/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/clog/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT clog/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/clog/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/grid_cgi/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/grid_cgi/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT grid_cgi/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/xmlwrapp/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/eutils_client/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/eutils_client/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT eutils_client/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/hydra_client/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/hydra_client/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT hydra_client/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/discrepancy/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/discrepancy/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/xmlreaders/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/xmlreaders/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT xmlreaders/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/hgvs/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/hgvs/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT hgvs/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/hgvs/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/netstorage/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/netstorage/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/biosample_util/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/biosample_util/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT biosample_util/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/data_loaders_util/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/data_loaders_util/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT data_loaders_util/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/lapackwrapp/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/pmcidconv_client/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/pmcidconv_client/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT pmcidconv_client/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/cgi_redirect/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/misc/cgi_redirect/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /usr/local/bin/gmake -C third_party all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/third_party' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/third_party' /usr/local/bin/gmake -C third_party_static all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/third_party_static' /usr/local/bin/gmake -C clog all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/clog' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/clog' /usr/local/bin/gmake -C grid_cgi all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/grid_cgi' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/grid_cgi' /usr/local/bin/gmake -C xmlwrapp all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/xmlwrapp' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/xmlwrapp' /usr/local/bin/gmake -C eutils_client all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/eutils_client' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/eutils_client' /usr/local/bin/gmake -C hydra_client all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/hydra_client' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/hydra_client' /usr/local/bin/gmake -C discrepancy all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/discrepancy' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/discrepancy' /usr/local/bin/gmake -C xmlreaders all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/xmlreaders' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/xmlreaders' /usr/local/bin/gmake -C hgvs all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/hgvs' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/hgvs' /usr/local/bin/gmake -C netstorage all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/netstorage' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/netstorage' /usr/local/bin/gmake -C jsonwrapp all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' /usr/local/bin/gmake -C test all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[5]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/jsonwrapp' /usr/local/bin/gmake -C biosample_util all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/biosample_util' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/biosample_util' /usr/local/bin/gmake -C data_loaders_util all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/data_loaders_util' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/data_loaders_util' /usr/local/bin/gmake -C lapackwrapp all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/lapackwrapp' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/lapackwrapp' /usr/local/bin/gmake -C pmcidconv_client all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/pmcidconv_client' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C cgi_redirect all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/misc' /usr/local/bin/gmake -C gui all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/gui' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/gui' /usr/local/bin/gmake -C app all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asn2asn/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asn2asn/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT asn2asn/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn2asn/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asn2fasta/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asn2fasta/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT asn2fasta/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn2fasta/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asn2flat/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asn2flat/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT asn2flat/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn2flat/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/flat2asn/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/flat2asn/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/flat2asn/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT flat2asn/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/flat2asn/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asnval/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asnval/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/asnval/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT 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/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/sub_fuse/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT sub_fuse/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/sub_fuse/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/feat_import/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/feat_import/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/feat_import/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT feat_import/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/feat_import/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/split_cache/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/split_cache/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/split_cache/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT split_cache/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/split_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/wig2table/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/wig2table/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/wig2table/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT wig2table/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/wig2table/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/netcache/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/netcache/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/netcache/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT netcache/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/netcache/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/rmblastn/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/rmblastn/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/rmblastn/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT rmblastn/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/rmblastn/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dblb/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dblb/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dblb/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT dblb/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dblb/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/tls/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/tls/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/tls/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT tls/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/tls/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/idfetch/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/idfetch/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/idfetch/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT idfetch/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/idfetch/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/pubseq_gateway/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/pubseq_gateway/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/pubseq_gateway/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile /usr/local/bin/gmake -C asn2asn all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn2asn' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn2asn' /usr/local/bin/gmake -C asn2fasta all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn2fasta' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn2fasta' /usr/local/bin/gmake -C asn2flat all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn2flat' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn2flat' /usr/local/bin/gmake -C flat2asn all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/flat2asn' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/flat2asn' /usr/local/bin/gmake -C asnval all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asnval' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asnval' /usr/local/bin/gmake -C asn_cleanup all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn_cleanup' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn_cleanup' /usr/local/bin/gmake -C id1_fetch all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/id1_fetch' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/id1_fetch' /usr/local/bin/gmake -C blast all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast all gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/legacy_blast.pl /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/legacy_blast.pl /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast all gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/update_blastdb.pl /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/update_blastdb.pl /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast all gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/get_species_taxids.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/get_species_taxids.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/get_species_taxids.sh gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast all gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/cleanup-blastdb-volumes.py gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blast_app_util export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blast_app_util flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blastp flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blastn flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blastx flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=tblastn flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=tblastx flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=psiblast flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=rpsblast flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=rpstblastn flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blast_formatter flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=deltablast flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=seedtop flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blast_app_util all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_app_util.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_app_util.hpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_app_util.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_app_util.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_app_util.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objmgr/object_manager.hpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_app_util.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blastp all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_node.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_app.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_node.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_node.cpp -o blastp_node.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastp -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O blastp_node.o blastp_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o blastp strip blastp /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f blastp /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/blastp gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blastn all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_node.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_app.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_node.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_node.cpp -o blastn_node.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastn -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O blastn_node.o blastn_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lxformat-static -lxcleanup-static -lvalid-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lsubmit-static -lxregexp-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o blastn strip blastn /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f blastn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/blastn gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blastx all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_node.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_app.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_node.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_node.cpp -o blastx_node.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastx -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O blastx_node.o blastx_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o blastx strip blastx /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f blastx /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/blastx gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=tblastn all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_node.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_app.cpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_node.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O tblastn_node.o tblastn_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o tblastn strip tblastn /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/tblastn gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=tblastx all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastx_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastx_app.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastx_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastx_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastx_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastx -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O tblastx_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o tblastx strip tblastx /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f tblastx /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/tblastx gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=psiblast all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/psiblast_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/psiblast_app.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/psiblast_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/psiblast_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/psiblast_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=psiblast -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O psiblast_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o psiblast strip psiblast /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f psiblast /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/psiblast gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=rpsblast all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_node.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O rpsblast_node.o rpsblast_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o rpsblast strip rpsblast /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f rpsblast /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/rpsblast gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=rpstblastn all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_node.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O rpstblastn_node.o rpstblastn_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o rpstblastn strip rpstblastn /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f rpstblastn /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/rpstblastn gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=blast_formatter all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:41: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:83:10: warning: 'LoadSeq_idSeq_ids' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 83 | bool LoadSeq_idSeq_ids(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:105:18: note: overridden virtual function is here 105 | virtual bool LoadSeq_idSeq_ids(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:85:10: warning: 'LoadSeq_idGi' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 85 | bool LoadSeq_idGi(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:107:18: note: overridden virtual function is here 107 | virtual bool LoadSeq_idGi(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:87:10: warning: 'LoadSeq_idAccVer' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 87 | bool LoadSeq_idAccVer(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:109:18: note: overridden virtual function is here 109 | virtual bool LoadSeq_idAccVer(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:89:10: warning: 'LoadSeq_idLabel' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 89 | bool LoadSeq_idLabel(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:111:18: note: overridden virtual function is here 111 | virtual bool LoadSeq_idLabel(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:91:10: warning: 'LoadSeq_idTaxId' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 91 | bool LoadSeq_idTaxId(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:113:18: note: overridden virtual function is here 113 | virtual bool LoadSeq_idTaxId(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:93:10: warning: 'LoadSequenceHash' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 93 | bool LoadSequenceHash(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:115:18: note: overridden virtual function is here 115 | virtual bool LoadSequenceHash(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:95:10: warning: 'LoadSequenceLength' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 95 | bool LoadSequenceLength(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:117:18: note: overridden virtual function is here 117 | virtual bool LoadSequenceLength(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:97:10: warning: 'LoadSequenceType' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 97 | bool LoadSequenceType(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:119:18: note: overridden virtual function is here 119 | virtual bool LoadSequenceType(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:99:10: warning: 'LoadSeq_idBlob_ids' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 99 | bool LoadSeq_idBlob_ids(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:102:18: note: overridden virtual function is here 102 | virtual bool LoadSeq_idBlob_ids(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:103:10: warning: 'LoadAccVers' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 103 | bool LoadAccVers(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:133:18: note: overridden virtual function is here 133 | virtual bool LoadAccVers(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:105:10: warning: 'LoadGis' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 105 | bool LoadGis(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:135:18: note: overridden virtual function is here 135 | virtual bool LoadGis(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:107:10: warning: 'LoadLabels' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 107 | bool LoadLabels(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:137:18: note: overridden virtual function is here 137 | virtual bool LoadLabels(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:109:10: warning: 'LoadTaxIds' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 109 | bool LoadTaxIds(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:139:18: note: overridden virtual function is here 139 | virtual bool LoadTaxIds(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:111:10: warning: 'LoadHashes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 111 | bool LoadHashes(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:141:18: note: overridden virtual function is here 141 | virtual bool LoadHashes(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:114:10: warning: 'LoadLengths' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 114 | bool LoadLengths(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:144:18: note: overridden virtual function is here 144 | virtual bool LoadLengths(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:116:10: warning: 'LoadTypes' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 116 | bool LoadTypes(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:146:18: note: overridden virtual function is here 146 | virtual bool LoadTypes(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:118:10: warning: 'LoadStates' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 118 | bool LoadStates(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:148:18: note: overridden virtual function is here 148 | virtual bool LoadStates(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:121:10: warning: 'LoadBlobState' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 121 | bool LoadBlobState(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:151:18: note: overridden virtual function is here 151 | virtual bool LoadBlobState(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:123:10: warning: 'LoadBlobVersion' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 123 | bool LoadBlobVersion(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:153:18: note: overridden virtual function is here 153 | virtual bool LoadBlobVersion(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:126:10: warning: 'LoadBlobs' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 126 | bool LoadBlobs(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:156:18: note: overridden virtual function is here 156 | virtual bool LoadBlobs(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:130:10: warning: 'LoadBlobs' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 130 | bool LoadBlobs(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:160:18: note: overridden virtual function is here 160 | virtual bool LoadBlobs(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:134:10: warning: 'LoadBlob' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 134 | bool LoadBlob(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:164:18: note: overridden virtual function is here 164 | virtual bool LoadBlob(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:136:10: warning: 'LoadChunk' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 136 | bool LoadChunk(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:168:18: note: overridden virtual function is here 168 | virtual bool LoadChunk(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:138:10: warning: 'LoadChunks' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 138 | bool LoadChunks(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:170:18: note: overridden virtual function is here 170 | virtual bool LoadChunks(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:141:10: warning: 'LoadBlobSet' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] 141 | bool LoadBlobSet(CReaderRequestResult& result, | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:173:18: note: overridden virtual function is here 173 | virtual bool LoadBlobSet(CReaderRequestResult& result, | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 32 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blast_formatter -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O blast_formatter.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o blast_formatter strip blast_formatter /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f blast_formatter /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/blast_formatter gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=deltablast all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/deltablast_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/deltablast_app.cpp:45: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/deltablast_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/deltablast_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/deltablast_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=deltablast -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O deltablast_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o deltablast strip deltablast /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f deltablast /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/deltablast gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast TMPL=seedtop all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/seedtop_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/seedtop_app.cpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/format/blast_format.hpp:58: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/seedtop_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/seedtop_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/seedtop_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=seedtop -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O seedtop_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o seedtop strip seedtop /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f seedtop /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/seedtop gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blast' /usr/local/bin/gmake -C convert_seq all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/convert_seq' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/convert_seq' /usr/local/bin/gmake -C nmer_repeats all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/nmer_repeats' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/nmer_repeats' /usr/local/bin/gmake -C objmgr all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/objmgr' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/objmgr' /usr/local/bin/gmake -C gi2taxid all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/gi2taxid' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/gi2taxid' /usr/local/bin/gmake -C netschedule all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/netschedule' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/netschedule' /usr/local/bin/gmake -C grid all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/grid' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/grid' /usr/local/bin/gmake -C netstorage all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/netstorage' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/netstorage' /usr/local/bin/gmake -C igblast all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/igblast' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/igblast' /usr/local/bin/gmake -C winmasker all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/windowmasker_2.2.22_adapter.py gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker TMPL=winmasker flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker TMPL=winmasker all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/main.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/main.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/main.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_app.cpp:234:11: warning: variable 'total' set but not used [-Wunused-but-set-variable] 234 | Uint4 total = 0, total_masked = 0; | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_app.cpp:234:22: warning: variable 'total_masked' set but not used [-Wunused-but-set-variable] 234 | Uint4 total = 0, total_masked = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidbg.hpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 5 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:34: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:34: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:34: In file included from /usr/include/c++/v1/vector:325: In file included from /usr/include/c++/v1/__format/formatter_bool.h:17: In file included from /usr/include/c++/v1/__format/concepts.h:17: In file included from /usr/include/c++/v1/__format/format_parse_context.h:14: In file included from /usr/include/c++/v1/__format/format_error.h:15: In file included from /usr/include/c++/v1/stdexcept:47: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:43:20: warning: unused function 'iupacna_to_blastna' [-Wunused-function] 43 | static inline char iupacna_to_blastna( char c ) | ^~~~~~~~~~~~~~~~~~ 4 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/main.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/main.cpp -o main.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O main.o win_mask_app.o win_mask_sdust_masker.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o windowmasker strip windowmasker /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f windowmasker /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/windowmasker gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/winmasker' /usr/local/bin/gmake -C dustmasker all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker TMPL=dustmasker flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker TMPL=dustmasker all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/main.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/main.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/main.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/main.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/main.cpp -o main.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O main.o dust_mask_app.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o dustmasker strip dustmasker /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f dustmasker /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/dustmasker gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dustmasker' /usr/local/bin/gmake -C segmasker all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/segmasker TMPL=segmasker flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/segmasker TMPL=segmasker all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/segmasker/segmasker.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/segmasker/segmasker.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/segmasker/segmasker.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/segmasker/segmasker.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=segmasker -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O segmasker.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lxobjsimple-static -lxalgosegmask-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o segmasker strip segmasker /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f segmasker /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/segmasker gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/segmasker' /usr/local/bin/gmake -C blastdb all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdbcmd flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=makeblastdb flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdb_aliastool flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdbcheck flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=convert2blastmask flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdbcp flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=makeprofiledb flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdb_convert flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdb_path flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=makeclusterdb flag-stamps gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdbcmd all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:51: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:1213:10: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 1213 | CRef m = m_BlastDb->GetDBMetaData(output_prefix); | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:1211:13: note: previous statement is here 1211 | if (!output_prefix.empty() && (output_prefix.back() != CFile::GetPathSeparator())) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcmd.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O blastdbcmd.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o blastdbcmd strip blastdbcmd /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcmd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/blastdbcmd gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=makeblastdb all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objostrjson.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeblastdb.cpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objostrjson.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objostrjson.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 3 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeblastdb.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/masked_range_set.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O makeblastdb.o masked_range_set.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o makeblastdb strip makeblastdb /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f makeblastdb /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/makeblastdb gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdb_aliastool all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:594:18: warning: variable 'line_ctr' set but not used [-Wunused-but-set-variable] 594 | unsigned int line_ctr = 0; | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O blastdb_aliastool.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o blastdb_aliastool strip blastdb_aliastool /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_aliastool /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/blastdb_aliastool gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdbcheck all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcheck.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O blastdbcheck.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o blastdbcheck strip blastdbcheck /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcheck /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/blastdbcheck gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=convert2blastmask all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/convert2blastmask.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O convert2blastmask.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lsqlite3 -llmdb -pthread -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o convert2blastmask strip convert2blastmask /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f convert2blastmask /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/convert2blastmask gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdbcp all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcp.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcp.cpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcp.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcp.cpp:31: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcp.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcp -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O blastdbcp.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -ldbapi_driver -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o blastdbcp strip blastdbcp /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdbcp /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/blastdbcp gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=makeprofiledb all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:64: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeprofiledb.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O makeprofiledb.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o makeprofiledb strip makeprofiledb /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f makeprofiledb /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/makeprofiledb gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdb_convert all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:385:13: warning: variable 'vol_ctr' set but not used [-Wunused-but-set-variable] 385 | int vol_ctr(0); | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_convert.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O blastdb_convert.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o blastdb_convert strip blastdb_convert /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_convert /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/blastdb_convert gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=blastdb_path all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp.hpp:42: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiapp_api.hpp:43: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiargs.hpp:84: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbiobj.hpp:39: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbicntr.hpp:40: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 7 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_path.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_path -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O blastdb_path.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o blastdb_path strip blastdb_path /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f blastdb_path /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/blastdb_path gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb TMPL=makeclusterdb all In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objostrjson.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:600:1: note: in instantiation of default argument for 'basic_string' required here 600 | basic_string CStringUTF8_DEPRECATED::AsBasicString( | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:60: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_usage_report.hpp:37: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:189:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 189 | : m_Host(move(host)), m_Port(port) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/connect/ncbi_http_session.hpp:191:76: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 191 | : m_Host(move(host)), m_Port(port), m_User(move(user)), m_Password(move(password)) {} | ^ | std:: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:565:10: warning: unused variable 'success' [-Wunused-variable] 565 | bool success = m_DB->EndBuild(); | ^~~~~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objostrjson.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:589:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 589 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeclusterdb.cpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/serial/objostrjson.hpp:35: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61: In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:39: In file included from /usr/include/c++/v1/iosfwd:111: In file included from /usr/include/c++/v1/__fwd/fstream.h:13: /usr/include/c++/v1/__fwd/string.h:45:41: warning: 'char_traits' is deprecated: char_traits for T not equal to char, wchar_t, char8_t, char16_t or char32_t is non-standard and is provided for a temporary period. It will be removed in LLVM 19, so please migrate off of it. [-Wdeprecated-declarations] 45 | template , class _Allocator = allocator<_CharT> > | ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5675:5: note: in instantiation of default argument for 'basic_string' required here 5675 | basic_string result; | ^~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString' requested here 603 | return CUtf8::x_AsBasicString(str,substitute_on_error, (CUtf8::EValidate)validate); | ^ /usr/include/c++/v1/__string/char_traits.h:81:8: note: 'char_traits' has been explicitly marked deprecated here 81 | struct _LIBCPP_DEPRECATED_( | ^ /usr/include/c++/v1/__config:978:53: note: expanded from macro '_LIBCPP_DEPRECATED_' 978 | # define _LIBCPP_DEPRECATED_(m) __attribute__((__deprecated__(m))) | ^ 8 warnings generated. gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeclusterdb.cpp. /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeclusterdb -DNCBI_BUILD_SESSION_ID=04b9c536-27c9-11f0-882a-005056b296de /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/app/blastdb/makeclusterdb.cpp -o makeclusterdb.o /usr/local/libexec/ccache/c++ -stdlib=libc++ -std=gnu++17 -Wl,-rpath,/usr/local/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -fstack-protector-strong -L/usr/local/lib -O makeclusterdb.o -L/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib -lwritedb-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lsqlitewrapp-static -lscoremat-static -ltables-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -lpsg_client-static -lxconnserv-static -lxxconnect2-static -ldbapi_driver-static -lncbi_xreader-static -lxconnext-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lsqlite3 -llmdb -pthread -luv -lnghttp2 -lz -lbz2 -llzo2 -lzstd -lz -ldw -lm -pthread -o makeclusterdb strip makeclusterdb /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeclusterdb /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin /bin/ln -f makeclusterdb /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/makeclusterdb gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastdb' /usr/local/bin/gmake -C blastvdb all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastvdb' NOTE: Skipping project blastvdb due to unmet requirements: VDB gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastvdb' gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastvdb' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/blastvdb' /usr/local/bin/gmake -C vecscreen all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/vecscreen' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/vecscreen' /usr/local/bin/gmake -C agpconvert all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/agpconvert' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/agpconvert' /usr/local/bin/gmake -C id2_fetch all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/id2_fetch' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/id2_fetch' /usr/local/bin/gmake -C agp_validate all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/agp_validate' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/agp_validate' /usr/local/bin/gmake -C objextract all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/objextract' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/objextract' /usr/local/bin/gmake -C bdb_env_keeper all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/bdb_env_keeper' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/bdb_env_keeper' /usr/local/bin/gmake -C nw_aligner all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/nw_aligner' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/nw_aligner' /usr/local/bin/gmake -C speedtest all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/speedtest' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/speedtest' /usr/local/bin/gmake -C idmapper all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/idmapper' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/idmapper' /usr/local/bin/gmake -C formatguess all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/formatguess' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/formatguess' /usr/local/bin/gmake -C multireader all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/multireader' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/multireader' /usr/local/bin/gmake -C read_blast_result all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/read_blast_result' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/read_blast_result' /usr/local/bin/gmake -C splign all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/splign' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/splign' /usr/local/bin/gmake -C hfilter all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/hfilter' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/hfilter' /usr/local/bin/gmake -C annotwriter all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/annotwriter' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/annotwriter' /usr/local/bin/gmake -C compart all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/compart' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/compart' /usr/local/bin/gmake -C streamtest all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/streamtest' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/streamtest' /usr/local/bin/gmake -C lds2_indexer all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/lds2_indexer' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/lds2_indexer' /usr/local/bin/gmake -C discrepancy_report all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/discrepancy_report' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/discrepancy_report' /usr/local/bin/gmake -C biosample_chk all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/biosample_chk' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/biosample_chk' /usr/local/bin/gmake -C bsdiff all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/bsdiff' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/bsdiff' /usr/local/bin/gmake -C gap_stats all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/gap_stats' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/gap_stats' /usr/local/bin/gmake -C table2asn all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/table2asn' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/table2asn' /usr/local/bin/gmake -C srcchk all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/srcchk' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/srcchk' /usr/local/bin/gmake -C tableval all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/tableval' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/tableval' /usr/local/bin/gmake -C ncbi_encrypt all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/ncbi_encrypt' /usr/local/bin/gmake -C ssub_fork all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/ssub_fork' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/ssub_fork' /usr/local/bin/gmake -C asn_cache all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn_cache' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/asn_cache' /usr/local/bin/gmake -C magicblast all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/magicblast' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/magicblast' /usr/local/bin/gmake -C multipattern all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/multipattern' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/multipattern' /usr/local/bin/gmake -C prt2fsm all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/prt2fsm' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/prt2fsm' /usr/local/bin/gmake -C pub_report all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/pub_report' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/pub_report' /usr/local/bin/gmake -C gff_deconcat all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/gff_deconcat' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/gff_deconcat' /usr/local/bin/gmake -C sub_fuse all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/sub_fuse' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/sub_fuse' /usr/local/bin/gmake -C feat_import all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/feat_import' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/feat_import' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C split_cache all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/split_cache' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C wig2table all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/wig2table' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C netcache all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/netcache' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C rmblastn all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/rmblastn' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C dblb all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dblb' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C tls all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/tls' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C idfetch all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/idfetch' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/idfetch' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/local/bin/gmake -C pubseq_gateway all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app/pubseq_gateway' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/app' /usr/local/bin/gmake -C sample all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sample' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/sample' /usr/local/bin/gmake -C internal all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/internal' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/internal' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build' =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-blast+-2.16.0_3 depends on package: p5-List-MoreUtils>=0 - not found ===> Installing existing package /packages/All/p5-List-MoreUtils-0.430.pkg [pkg-builder.dan.net.uk] Installing p5-List-MoreUtils-0.430... [pkg-builder.dan.net.uk] `-- Installing p5-Exporter-Tiny-1.006002... [pkg-builder.dan.net.uk] `-- Extracting p5-Exporter-Tiny-1.006002: .......... done [pkg-builder.dan.net.uk] `-- Installing p5-List-MoreUtils-XS-0.430... [pkg-builder.dan.net.uk] `-- Extracting p5-List-MoreUtils-XS-0.430: .... done [pkg-builder.dan.net.uk] Extracting p5-List-MoreUtils-0.430: ....... done ===> ncbi-blast+-2.16.0_3 depends on package: p5-List-MoreUtils>=0 - found ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on package: p5-JSON>=0 - not found ===> Installing existing package /packages/All/p5-JSON-4.10.pkg [pkg-builder.dan.net.uk] Installing p5-JSON-4.10... [pkg-builder.dan.net.uk] Extracting p5-JSON-4.10: .......... done ===> ncbi-blast+-2.16.0_3 depends on package: p5-JSON>=0 - found ===> Returning to build of ncbi-blast+-2.16.0_3 ===> ncbi-blast+-2.16.0_3 depends on file: /usr/local/bin/python3.11 - found ===> ncbi-blast+-2.16.0_3 depends on package: perl5>=5.36<5.37 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for ncbi-blast+-2.16.0_3 ===> Generating temporary packing list if test -d /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/gbench; then \ /usr/local/bin/gmake install-gbench; \ else \ /usr/local/bin/gmake install-toolkit; \ fi gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++' /bin/rm -rf /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/include/ncbi-tools++ /usr/bin/install -c -d /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/bin /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/lib/ncbi-tools++ /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/include/ncbi-tools++ /usr/bin/install -c /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/bin/* /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/bin /usr/bin/install -c -m 644 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/*.* /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/lib/ncbi-tools++ if test -d /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/ncbi; then \ cp -pPR /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/ncbi /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/lib/ncbi-tools++/; \ fi rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/lib/ncbi-tools++/lib*-static.a cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/lib/ncbi-tools++ && \ for x in *.a; do \ /bin/ln -s "$x" "`/usr/bin/basename \"$x\" .a`-static.a"; \ done for d in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc; do \ cd $d && find * -name .svn -prune -o -print | \ cpio -pd /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/include/ncbi-tools++ ; \ done 79756 blocks 78 blocks gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++' /bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/include/ncbi-tools++/*/*/.cvsignore.extra /bin/rm -f -rf /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/lib/X11 /bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/include/ncbi-tools++/common/config/ncbiconf_msvc_site.h.in /bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/include/ncbi-tools++/common/ncbi_build_ver.h.in /bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/include/ncbi-tools++/common/ncbi_revision.h.in /bin/rmdir /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/lib/debug /usr/bin/strip /wrkdirs/usr/ports/biology/ncbi-blast+/work/stage/usr/local/lib/ncbi-tools++/*.so ====> Compressing man pages (compress-man) ===> Installing ldconfig configuration file =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-03T02:44:28+0000' 'PKG_NOTE_ports_top_git_hash=5529c5919b' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=8de761e7d4' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for ncbi-blast+-2.16.0_3 ===> Building ncbi-blast+-2.16.0_3 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for ncbi-blast+-2.16.0_3 build of biology/ncbi-blast+ | ncbi-blast+-2.16.0_3 ended at Sat May 3 06:08:06 BST 2025 build time: 02:23:40